Conserved Protein Domain Family
Herpes_UL52

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pfam03121: Herpes_UL52 
Herpesviridae UL52/UL70 DNA primase
Herpes simplex virus type 1 DNA replication in host cells is known to be mediated by seven viral-encoded proteins, three of which form a heterotrimeric DNA helicase-primase complex. This complex consists of UL5, UL8, and UL52 subunits. Heterodimers consisting of UL5 and UL52 have been shown to retain both helicase and primase activities. Nevertheless, UL8 is still essential for replication: though it lacks any DNA binding or catalytic activities, it is involved in the transport of UL5-UL52 and it also interacts with other replication proteins. The molecular mechanisms of the UL5-UL52 catalytic activities are not known. While UL5 is associated with DNA helicase activity and UL52 with DNA primase activity, the helicase activity requires the interaction of UL5 and UL52. It is not known if the primase activity can be maintained by UL52 alone. The region encompassed by residues 610-636 of HSV1 UL52 is thought to contain a divalent metal cation binding motif. Indeed, this region contains several aspartate and glutamate residues that might be involved in divalent cation binding. The biological significance of UL52-UL8 interaction is not known. Yeast two-hybrid analysis together with immunoprecipitation experiments have shown that the HSV1 UL52 region between residues 366-914 is essential for this interaction, while the first 349 N-terminal residues are dispensable. This family also includes protein UL70 from cytomegalovirus (CMV, a subgroup of the Herpesviridae) strains, which, by analogy with UL52, is thought to have DNA primase activity. Indeed, CMV strains also possess a DNA helicase-primase complex, the other subunits being protein UL105 (with known similarity to HSV1 UL5) and protein UL102.
Statistics
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PSSM-Id: 367342
Aligned: 38 rows
Threshold Bit Score: 36.6264
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6UDM2 1206 IRVYEGRICAALRRGgagymsgRRSNFTCLKYQHRGAsMQTVIASVVVAVNSQGlPYA------ALQTRCFATK------ 1273 Psittacid herpesvir...
Q98518  299 VIRTEHVYMFRHTSKy------------CANVEREHT-SSNAYFMVTKSGMKQC---------------CYSRKeedvgr 350  Paramecium bursaria...
Q32PL8  373 YFACEQLLVYDIEKFr-----------wCHNVKRFHK-SNNIIIVVDLKEEV-------------WYQKCHDPE------ 421  zebrafish
Q5RFF3  169 YFFPEELLVYDICKY-----------RWCENIGRAHK-SNNIMILVDLKNEV-------------WYQKCHDPV------ 217  Bornean orangutan
Q69RL2  445 WFSHYGLMIYSMSRSr-----------yCEHIGREHK-SNHVMYIVEFQRAA-------------YYQKCYDPD------ 493  Japanese rice
Q9FLY1  446 WFSEDGLIVYSMLRNr-----------yCERIGREHKsNHGTICSQPIYDIRVSmMYIvdlrrgIYYQKCYDPD------ 508  thale cress
Q4CZS9  520 RQRGGRYLFFLLDGSr-----------yCSNVGRQHL-SNNVYITVDLQQRV-------------WVQKCFDPD------ 568  Trypanosoma cruzi
Q57Z42  507 RRCGDRYLLFMLKGS-----------RYCGNIGRQHR-SNNVYISVDLHCG-------------MWVQKCFDPE------ 555  Trypanosoma brucei
Q5CUI0  422 YFKEKELIIISVSKL----------NKLCFNIEREHI-SNGIKLIIDFYNKR-------------FYQKCFDPD------ 471  Cryptosporidium parvum
Q00159  592 RLTPw-----------------MTRDRFCLVHNRIHH-KAGVSVIVTNRR---------------IYPKCFHPD------ 632  Ictalurid herpesvir...
Q6UDM2 1274 --CG-SNELQTQFTVTLS 1288 Psittacid herpesvirus 1 Amazon parrot/1997
Q98518  351 kyCLcSQFRGDVIKLPKk 368  Paramecium bursaria Chlorella virus 1
Q32PL8  422 --CRrQNYRSSSFPLPQe 437  zebrafish
Q5RFF3  218 --CKaENFKSDCFPLPAe 233  Bornean orangutan
Q69RL2  494 --CQ--GYRSPLRPVPWd 507  Japanese rice
Q9FLY1  509 --CR-GVYTILTHCLGKq 523  thale cress
Q4CZS9  569 --CA--LYRCAPRAIPDd 582  Trypanosoma cruzi
Q57Z42  556 --CA--GYRGPPQPLPPl 569  Trypanosoma brucei
Q5CUI0  472 --CI--NFKSRSFTVPEs 485  Cryptosporidium parvum
Q00159  633 --PPaHVIPEGGFLDVVE 648  Ictalurid herpesvirus 1 (strain Auburn)
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