3SGI


Conserved Protein Domain Family
DNA_ligase_ZBD

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pfam03119: DNA_ligase_ZBD 
NAD-dependent DNA ligase C4 zinc finger domain
DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilising either ATP or NAD(+) as a cofactor. This family is a small zinc binding motif that is presumably DNA binding. IT is found only in NAD dependent DNA ligases.
Statistics
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PSSM-Id: 397299
Aligned: 447 rows
Threshold Bit Score: 31.6279
Threshold Setting Gi: 145356969
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3SGI_A               417 TCPECGSPLApEKEGDADIRCPNaRGCP 444
A1BDQ5               416 vCPECGASLE-KPENEVSYYCPDqDSCP 442 Chlorobium phaeobacteroides DSM 266
Q3ATX4               406 HCPECDTPLI-KPENEVSWYCPNeEHCP 432 Chlorobium chlorochromatii CaD3
B4S4Y6               414 HCPVCGTALL-HPENEVSWYCPNsQSCP 440 Prosthecochloris aestuarii DSM 271
Q8KF74               414 ECPVCGTRLE-RPEGEVNWYCPNeEGCP 440 Chlorobaculum tepidum TLS
PRJNA234054:Hsw_2010 407 ECPACGTPLI-RPEGEAHFRCPNdRGCP 433 Hymenobacter swuensis DY53
CCH01187             424 ECPACGTPLV-RKEGEAHFYCTNdKHCP 450 Fibrella aestuarina BUZ 2
WP_025228153         434 iCPVCETPLQ-RREGEVALRCPN-RHCP 459 Fimbriimonas ginsengisoli
jgi:Afer_1554        398 TCPVCHTPLV-RDRGEVDWRCPN-RRCP 423 Acidimicrobium ferrooxidans DSM 10331
A5V1U3               423 TCPACGTPLE-RAEGEVAYRCPNfGICP 449 Roseiflexus sp. RS-1
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