1UL5


Conserved Protein Domain Family
SBP

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pfam03110: SBP 
SBP domain
SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.
Statistics
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PSSM-Id: 397296
Aligned: 77 rows
Threshold Bit Score: 88.8291
Threshold Setting Gi: 255081452
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1UL5_A              6 CQVPDCEADISEl-kGYHKRHRVCLRCATASFVVLDGE----NKRYCQQCGKFHLLPDFDE------GKRSCRRKLERHN 74  
XP_003063374      173 CLVDNCENPRKQm-lQRARMYLTCAEHARAKMVMFKDE----ECRECQACRTFHPLSEFDG------LNKTCETRLSRKK 241  Micromona...
jgi:MICPUN_61429  600 CLVDDCFTPRKQpseQNSRMPLTCKEHSGALVVLYGGV----ASRECQACRTFHPITAFDR------DNKTCETRLLRKK 669  Micromona...
XP_002500625      126 CQVDDCLNPRKQp-tANSRMPLTCAEHNGMLSLTYGGE----ASRECQACRAFHPVSAFDR------DNKTCETRLLRKK 194  Micromona...
XP_002952986       92 CQADGCMADLSGl-rRYFRRYHVCETHIRSQVVHIGGR----EVRFCDQCSTFHPLAFFDG------VRRTCRDKLEQNR 160  Volvox ca...
XP_003059595      129 CTADGCDKACDTa---YTRRYRTCREHIDSLDVLRDGL----HQRFCQRCSSFHALAAFDG------SRHTCRQALDAYN 195  Micromona...
XP_002504061      174 CTVDNCGEPCVSv---YCRRYHTCREHIGALHVVRNGA----DVRFCQRCSSFQPISDFDG------DRHTCRDALRAYN 240  Micromona...
XP_002507948       78 CQVVGCDIEYSS---THECRARACQTHCSALSVRLEGQdpeqQFRFCYQCHKFHELDAFRNpdgtlrPRHNCYQSQALRL 154  Micromona...
XP_005845837      294 CRVPGCSRELKVg---FLQRCRCCEFHSREPQLELHGV----TSRFCQQCGFFHALEEFDA------QRRSCRRSLERHR 360  Chlorella...
EFN51625           70 CRVPGCTLRLLLa---YNQRHRICRVHQKSATIDIEGE----PWRFCQQCAKLQKVEGFDG------EKRSCRDSLNQQK 136  Chlorella...
1UL5_A             75 NRRKRK 80  
XP_003063374      242 VRYRAR 247  Micromonas pusilla CCMP1545
jgi:MICPUN_61429  670 LRYRAK 675  Micromonas commoda
XP_002500625      195 LRYRAK 200  Micromonas commoda
XP_002952986      161 MKRRAR 166  Volvox carteri f. nagariensis
XP_003059595      196 ESRRKI 201  Micromonas pusilla CCMP1545
XP_002504061      241 SARREA 246  Micromonas commoda
XP_002507948      155 DRRKKk 160  Micromonas commoda
XP_005845837      361 VCRRLR 366  Chlorella variabilis
EFN51625          137 QRRQLN 142  Chlorella variabilis
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