Conserved Protein Domain Family
CcmE

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pfam03100: CcmE 
CcmE
CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.
Statistics
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PSSM-Id: 397289
Aligned: 230 rows
Threshold Bit Score: 67.1282
Threshold Setting Gi: 336306479
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_004246735     92 QTRRLWTYAITFSCIAGFIVIVLNQFQDQ-L--VFYLTPTDALEKhaENP-TRSKFRLGGLVLENS----V--TPi-pNS 160 tomato
CAN99424         38 pSRSLGLLATLLVMVGALVALFLVGFKEA-A--VYATPVDQLLAS--KDKlAGRKVRVEGELVPGT----L--VKr-dSP 105 Sorangium ce...
Q3ACB4            1 mnQRTKILVGSGIIVIAIAFLFISAFASSgT--SYSLQVDEAVYKivYENaVDQKMRIEGRVLPGS----I--SWn-aKA 71  Carboxydothe...
WP_015261654      5 NKKNLKVLVGTLVIVVAIAYLILSSLSTVtT--AYYLKVGEALQ---GNIdLDKSYRIEGKIDVEK----A--TYntkKT 73  Desulfitobac...
jgi:TherJR_2283   1 -mknkkALVVVGIAVIAVGLLISAGMQNA-M--GENMTVAQALAAn-SRGeNPGFIQIESKVDNDT----I--KYd-sTV 68  Thermincola ...
jgi:Desdi_1118    1 mnkKIKMLIAVSTVLIAVAFLFIQGFRAS-GgvGEYLTIEEALSA--AQDkRDRFIQLEAVVVSSS----V--KYd-sAR 70  Desulfitobac...
WP_013560348     19 sTNKWKFIVGGLLIIAAVVYLIVSSATAN-A--QYFMTVEEVQQR--GASvVGRELRVSGAVIGES----I--QYd-pQT 86  Anaerolinea ...
jgi:Sulac_1510    1 msKKLRLQLGAFVILAALVYLVLQGAHNF-S--SYFVTVNTYRAD--MSQlAHQTVRVQGTLLASS----V--KYd-pAT 68  Sulfobacillu...
jgi:Runsl_3202    7 sttmKKIHLFGLIVIAIAIGIIISTYGSA-StySNFTEAEEL-----AKEgETSEVHVVGKLTKDTngqiVgmKYdpiAD 80  Runella slit...
BAL99280         20 qsfrskyIFGGLLLLTFVGFLIFQVYHATtTtgAYYLTVGELYER--VPQiYGERVRVSGNVVEGS----E--DWn-pQE 90  Caldilinea a...
XP_004246735    161 PEM-EFVITD----LiT----------------------DILVKYDGS-LPDLFRE----GHSVVVEGfikpfteemkkk 208 tomato
CAN99424        106 CEY-RFQIHGtq--------------------------aPLPVRYAQCvIPDTFRDvpsgGVQVTVEG------------ 146 Sorangium ce...
Q3ACB4           72 LEL-KFIMIPikgsE-Kt---------------------QLPVVYNDV-KPDNLEHp---EAQIVVEG------------ 112 Carboxydothe...
WP_015261654     74 PIElKFQIYDednpDq-----------------------KLTVIFKDV-KPDNFQD----ATGAIVEG------------ 113 Desulfitobac...
jgi:TherJR_2283  69 PIL-KFELTDgk--------------------------nRLPVVYRDV-MPDNFES----GYPVIVEG------------ 104 Thermincola ...
jgi:Desdi_1118   71 PLL-TFDLTDdk--------------------------nVISVEYADA-KPDNFDS----GYPVIVEG------------ 106 Desulfitobac...
WP_013560348     87 LRL-EFVVAHtpgsQ-KevdaqggmaavlhaavldpnrpRLKVVYLGV-KPDLLTN----EAQAIMTG------------ 147 Anaerolinea ...
jgi:Sulac_1510   69 ATL-RFTIASng--------------------------kTLPVIYHGP-MPNEQFQ----DASAICKG------------ 104 Sulfobacillu...
jgi:Runsl_3202   81 ANRfEFMLVDtn-------------------------kvVKKVVYLSP-KPQDFDK----SEQVVVIG------------ 118 Runella slit...
BAL99280         91 VTL-RFQIMDes-------------------------qhVLPVVFYGP-RPDNFTR----AASAIIEG------------ 127 Caldilinea a...
XP_004246735    209 eneilsekklQLTEkarsGDcYFAATEVLAKHDEKYMPP 247 tomato
CAN99424        147 ----------TLSQ----GG-DFEASLVMAKCTSKYDPN 170 Sorangium cellulosum So ce56
Q3ACB4          113 ----------KYDG----K--VFQADTLLVKCPSKYEKk 135 Carboxydothermus hydrogenoformans Z-2901
WP_015261654    114 ----------KFQQ----DG-TFNADILNLKCPSKYeag 137 Desulfitobacterium dichloroeliminans
jgi:TherJR_2283 105 ----------RFDE----KG-VLQADKLLVKCPSKYEee 128 Thermincola potens JR
jgi:Desdi_1118  107 ----------RFGE----DN-KFKADKVLVKCPSKYEee 130 Desulfitobacterium dichloroeliminans LMG P-21439
WP_013560348    148 ----------RLGE----DG-VFYAEELLLKCPTRYeea 171 Anaerolinea thermophila
jgi:Sulac_1510  105 ----------QMGP----NG-VFECQKLEIQCPDHYTPA 128 Sulfobacillus acidophilus DSM 10332
jgi:Runsl_3202  119 ----------RMQK----D--YFECNKILMKCPSKYTne 141 Runella slithyformis DSM 19594
BAL99280        128 ----------ELLP----DG-TFQAQTLLLKCPSRYeee 151 Caldilinea aerophila DSM 14535 = NBRC 104270
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