Conserved Protein Domain Family
ATHILA

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pfam03078: ATHILA 
ATHILA ORF-1 family
ATHILA is a group of Arabidopsis thaliana retrotransposons belonging to the Ty3/gypsy family of the long terminal repeat (LTR) class of eukaryotic retrotransposons. The central region of ATHILA retrotransposons contains two or three open reading frames (ORFs). This family represents the ORF1 product. The function of ORF1 is unknown.
Statistics
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PSSM-Id: 251715
Aligned: 11 rows
Threshold Bit Score: 321.188
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9MA69   12 AAQEEIARGKRVWESepvaeeevpeiekeaseedaqvdeEVSIVPTRRRRNTMRRKkeltieehYQYLMELSFEGTRYPH 91   thale cress
Q9FF24    5 TKRTNPKRSKTMTST------------------------EPQSEPVAHWTKEDKKA--------LKVISPLPSFPTRFAN 52   thale cress
Q9ZQ07   74 RRREEIARGKRSMTQnyelvde-----------emedhaDYIREPTHKTTKSLMKEdkltpgdyYKLLKRYLFWGTRYPH 142  thale cress
Q9SHM4   37 RRKAEIARGKRAMTEryelid-------------edvedEYMPEQTRRATKLLHKPdilpteeyVRLFKLNEFCSTRYPC 103  thale cress
Q9S9U7  301 RRKAEIARGKRAMTKryelin-------------edledEYMPEHTRRATKLLHKPdilpaeeyIRLFMQNEFCSTRYPC 367  thale cress
Q9SKS0  804 ERRAEIARGKRAMTSryelid-------------edidvEYEPVSWHRETKLLNRHdevtveeyIRLFELNDFWRTRYPC 870  thale cress
Q9LKT2  712 QRRAEIARGKRAMSSryevin-------------edietEYEPESWRRETKLLNKPdevtveeyIRFFEMNDFWGTRYLC 778  thale cress
O82611  587 LEEKEAYFEERGIEN-----------------------------------PTPSSHnhst----pspyPISTHHSTSTPS 627  thale cress
Q9M0U3   25 TRne-----------------------------------------------------------yYKLLKRNEFLGTRYPH 45   thale cress
Q9XH30    1 MHREEVARGKRVVEAeeehheeapfee-tvseekveiigDDTPTPV-GRRNRPRRKreptpseyYQYLKELKFEGTSYPH 78   thale cress
Q9ZPH1   98 MQREEVARCKRIVEAaeehqeeavfee-avskeeveiigDDTPAPV-GRRNRPKRKreptpseyYQYLMELKFEGTRYPH 175  thale cress
Q9MA69   92 RPTMQALGICRDVDYLMEMAKLETFFSYKCEGYKTESCQFLATLKLHFY--AEERERElhkgvGYITFMVFGIQYSVPIR 169  thale cress
Q9FF24   53 REILEKMGLLETIDEFFTKMGLGAFTSMDHPTFSEPTVDFFSTMEYTFTnpKIPLAKE-----GIINFKVKTKAFSISIP 127  thale cress
Q9ZQ07  143 PETMAELASWRTFN----------------SCSRKELFEGLSAAELReg------------glGYLSFTIDGRDYIMKIK 194  thale cress
Q9SHM4  104 STSLAQLGLLEDVQHLYQSCHLDTLMAYPYVAYEDETIQFLSTLQVKLYqgMTSDELDce-glGFLRFSVHGHEYRLSIK 182  thale cress
Q9S9U7  368 STTLAQLGLLEDVQHLYKSCHLDTLMAYPYVAYEEETIKFLSTLEVELYqgSIN-------------------------Q 422  thale cress
Q9SKS0  871 YQTLAQLGLLEDVQHLFEKCHLETLMSYQYVAYKKETIEFLSTLQVEMYqgLTADELEse-------------------- 930  thale cress
Q9LKT2  779 YETLAQLGLLEDVQHLFKKCHLETLMSYPYPAYKEETIEFLSTLQVEMYeaLTDFELDim-glGFLTFLVNEQRYQLSIK 857  thale cress
O82611  628 PSLTYHL-----LDLVISSTPIKLYPIPPHSSSPTNQLSYSQPLDL------------------LTIFFIYSTSTSFSTH 684  thale cress
Q9M0U3   46 PETMERLGIYDDVEYMFKQCSQNIHMFRPMDGYEEETVNFLSSVELFIYgeSEDDGIRpdgslGYLEFCVYDVEYRLPID 125  thale cress
Q9XH30   79 KGTMQE------------------------------------------------REKEergglGYITFKVRDVEYTLDIC 110  thale cress
Q9ZPH1  176 KETMQEIGIRGDVEYLIGLANLATFMSCQFGGFKEERCQLLATLKVHFH--VEDSEKEergglCYITFKVKGVEYVLDIS 253  thale cress
Q9MA69  170 QLDAVFKFPTKYGIR-QNFskDELLDLWLTIAGPLPYKSSRAKSslIRSPVLRYLHLCIASAFFPKKTTGHVNEGELKLL 248  thale cress
Q9FF24  128 DLCEAYGFENKSEMSfPKF--KGIHFFWGELASGKFSCNASIKS--VRHPVIRYALKLLAHALFGRGETSSTTVSEMCFL 203  thale cress
Q9ZQ07  195 TLETMFGFPSGKGTK-PRIirEELKAL--------------SKSnfIRNPAIRYFQRAFANVPYARKISATVTNQDMETL 259  thale cress
Q9SHM4  183 RLEGLFGFPSGTGSK-PKYerEELKDLWITIGSSVPLNASRSKSnqIRSPVIRYFQRSVANVLYSREITGTVTNSDMEMI 261  thale cress
Q9S9U7  423 ALGRIVWFPQWNGYC-PKFdrEELKDLWVTIGSFVPLNSSRSKSnqIRSRVIRYFQRSIANVLYFREITGTVTNSDMEMI 501  thale cress
Q9SKS0  931 -----------------------------------------------------------------gESTSTVSNTDMEMI 945  thale cress
Q9LKT2  858 KLEELFGFPSGKGTK-PRFdrEELKDLWATIENNLPLNLARSKSnqIRSHVICYFQRSVANVFYSRESTGTVFNTDIEMI 936  thale cress
O82611  685 QTSSSVRFHHSIAAAfVSLppPPLIHLWATIGNNLPLNLARSKSnqIQSPVICYFQRSVANVFYSRESTSTVSNTDMEMI 764  thale cress
Q9M0U3  126 HLEHMYGFPSEKDTS-HRFdkRELQSFLAMLGSK---------------------HGSLASALFARERNGTFDNGELELL 183  thale cress
Q9XH30  111 HLNTIFGFPSGEGIR-QDYdqEELKSLWKTIVGPKPFSPTKSKSssIRNPVIRYLHQCIANTLFPKKVTGSVSEEELCMI 189  thale cress
Q9ZPH1  254 HLDTIFGFPSGEEIR-QDYdqDELLSLWTIIAGPKPYSPARSKTysIRSPVIRDLHQCIANTLFPKKTTGFVGGEELCMI 332  thale cress
Q9MA69  249 DLTLCFIL----GRTRNGIEMEGDR-ADTSLSVVLIDHLIGFREYAAGIHQSgyggSLCAGGVITPILIAVGVPLHTPTH 323  thale cress
Q9FF24  204 FQGVKELLvedaDENGDGRLVHDDLgNDVNYGCIFASYLEDYKNRLIKGKTK----SIYIGGTLTPLFVKAGVDLSPFNA 279  thale cress
Q9ZQ07  260 DLALMSFL----HYTKDGKNMKRDA-NDTPRSMYLLNHLCSYRG------------------------------------ 298  thale cress
Q9SHM4  262 AMALKGTL----RQTKNGMSLQGKV-NNTPLSILLLIHLCGYKSWAVSNNRKrargALCIGGVVTPILIACGVPLISAGL 336  thale cress
Q9S9U7  502 AMALKGTL----RQTKNNMSLQGET-NDTPLSILLLIHLCGYKSWAVSNNHKrargALCVGGVVTLILIACEVPITSDGL 576  thale cress
Q9SKS0  946 DSALKGIL----RRTNGKKVLKGDL-NDAPPVMLLLIHLCGYRKWAHTNEKKrargALCVGGVVTPILIACGVPLTSLGF 1020 thale cress
Q9LKT2  937 DYALTGIL----RRTKGKNVLRGDL-NNAPQVMPLLIHFCGYRKWALTNGKKkvrgALCVGGVVTPILQGCGVPLKEPGL 1011 thale cress
O82611  765 DSALTGIL----RRTKGKNVLRGDL-NNAPPEM----------------------------------------------- 792  thale cress
Q9M0U3  184 ETALQELL----GLASDGTVLAGDQ-TEASVSFYLIEHLLSYRGWTKGLKKPg---RMAMGGVATLILRACNVPLHSKQI 255  thale cress
Q9XH30  190 DQSLVFIL----RETKDGRKMDGDR-ADTSLSVVLLDHLLSYMEYAATIHRSgirgSLCVGGLLTPILGAVGMEFGTPDV 264  thale cress
Q9ZPH1  333 DQALVFIL----RKTKDGRKMAGDR-ADTSLTIVLLDHLLSYRQYAATIlr----gSLC--------------------- 382  thale cress
Q9MA69  324 TSTYIDMEYLKRKCYLDRSAPADQLYFKFKHSTLGLSRLALPCKKFTTIRIGNNIDFDPSQSILvnvlaplqaepsigse 403  thale cress
Q9FF24  280 LPKREYIDYENLVRSCSLKRSDDAFIYLYTDREDNKLECILPSKEITNVESHEDIMFLPSKEYQ---------------- 343  thale cress
Q9ZQ07  299 --------------------------------------------EMTTITVRDHIDFSPQHEIL---------------- 318  thale cress
Q9SHM4  337 EPRAMDIEHLRHCEFLEFAMVDDFHRFRFEHSTDRRANILLPSPEVTLIIEGDNIDFKPEIGRLyyen-----------a 405  thale cress
Q9S9U7  577 EPRAMDIKHLHHSEILEFATVGDMPRFRFEHSIDKKASILLPSPEVTRIIEEDNIDFRPELENLyye------------- 643  thale cress
Q9SKS0 1021 DPRMMDLDHLRRCEFLEHDMVDDFYHYKFEHSLTRTANILLPCTEATTILHGENIDFKPERDCLyfes-----------a 1089 thale cress
Q9LKT2 1012 APRMMDLDHLRRCEFLEFDMAGDFHRYRFDNSSIKIANILLPCIDATRILEGRNIDFKPALEELyfeg-----------s 1080 thale cress
O82611  793 -------------------------------------------------------SVDPPgs------------------ 799  thale cress
Q9M0U3  256 PPRWIDMQHLINSKQFLSQQKNYLYKYRFDHPAAGQSIFLLLNSASTSIRDCGNIEFCPPVETL---------------- 319  thale cress
Q9XH30  265 LPKFIDLDYLKGKDFLEKTTPADRYLFKFNHTELGPSLLPLPCENQTSVKTKPNINFMPSPFALnidivgar---eyspa 341  thale cress
Q9ZPH1      --------------------------------------------------------------------------------      thale cress
Q9MA69  404 sqEEGAEWNEEEAEQEAytrPTEQFDEQEDSCDAATEQFFFEdyaeFDQ-ERDP-GQVHKKLGMLKGLgkfQRKLFSGLK 481  thale cress
Q9FF24  344 --VPNLEQFMEIEEEDL---PPSPRDDPYNLNKCDLPEFTFV----PKTkMEKFlQSVIKSQRKINKW---KSYAIGKLL 411  thale cress
Q9ZQ07  319 --HDVIGGSSSQKAKEV---DGQSDHEETNWEIYDTSRYHFEehkpPSR-ESKSlAEAHKNLSLTQRWckfQDKIIHKCV 392  thale cress
Q9SHM4  406 ppLDEDDLLEEAAS------DGMDEDRAVK---FDTSMYHFAehvpPAR-QSKSlTEAHKNNSKLHKWckkQDKLIANLL 475  thale cress
Q9S9U7  644 nvQAEDVLIEEATE------DGMDEDREVE---FDTSMYHFSehvpPAR-ESKSmSEAHRNNSKLQKWckkQDKLLAKCF 713  thale cress
Q9SKS0 1090 ppTDDNVPTTEPTGDEI---AEKDEDREEE---YDTSMYHFSehvpPAW-ESKSlSEAQRNNSKLQKWckkQDSLLIKGF 1162 thale cress
Q9LKT2 1081 ppTEEISHTEGATTKDI---DETDNIDEAE---FDTSMYHFSehipPAR-ESRSlSEAHRNNSKLQKWcmkQDKLLAKCH 1153 thale cress
O82611  800 ppTDDVSHTEGAPTEDV---DETDDIDEAE---FNTSMYHFSehipPAR-ESKSlSEAHRKNSKLQKWckkQDKLLVKCL 872  thale cress
Q9M0U3      --------------------------------------------------------------------------------      thale cress
Q9XH30  342 dyEQDEYFTQADYEEQI---EFEQHIYQLEHGTSEQEQAHYEeg--dDQ-GGDEiAELHKKLGVLEELgnlHTKTMKGFK 415  thale cress
Q9ZPH1  383 --------------QQV---ELEQHSEQPEQETKEFEQAHYEed--aDQ-GGDEiAQVHKKLGVLEELgnfHSKTMKGFK 442  thale cress
Q9MA69  482 KKVRKMKRAMDGMAVQI 498  thale cress
Q9FF24  412 KKVKKLQPPDYVSSEDE 428  thale cress
Q9ZQ07  393 KAIDNMQKALNCTTSTS 409  thale cress
Q9SHM4  476 WRCHRGDLMNLRTDLSL 492  thale cress
Q9S9U7  714 KTIKFLIYKLFHYSYST 730  thale cress
Q9SKS0 1163 KAIKFLTDKLSCSSSTT 1179 thale cress
Q9LKT2 1154 RAIKFMKNKLSCYSSNT 1170 thale cress
O82611  873 RAIKFLKDKISCSSSTT 889  thale cress
Q9M0U3  320 ---------------YT 321  thale cress
Q9XH30  416 KKMRTMKKSLKSMAVQL 432  thale cress
Q9ZPH1  443 KKIRTMKKSLKSMAAQI 459  thale cress
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