Conserved Protein Domain Family
Corona_NS3b

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pfam03053: Corona_NS3b (This model is not part of the current CDD release)
ORF3b coronavirus protein
Members of this family are non-structural proteins, approximately 250 amino acid residues long. They are found in transmissible gastroenteritis coronavirus (TGEV) and porcine respiratory coronavirus (PRCV) isolates. These proteins are found on the same mRNA as another product, designated ORF3a. While ORF3a/b has been implicated in TGEV and PRCV pathogenesis, its precise role remains unclear.
Statistics
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PSSM-Id: 515358
Aligned: 4 rows
Threshold Bit Score: 296.703
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9YRA6      1 MIGGLFLNTLSfvivsnhSIVSNTANVHHTQQQSFIAQQHHVVSAREQNYYPEFSIAVLFVSFLALYRSTNFKTCVAILM 80  Transmissible gast...
Q0Q465      1 MFLGLFQYTID-------TAVEHTVEHANLSQEEALMLEENIVPLRQATHVTGFLLTSVFVYFFALFKASSYKRNLLLFL 73  Scotophilus bat co...
NP_598311   1 MFLGLFQYTID-------TVVKDVSKSVNLSLDAVQELELNVVPIRQASNVTGFLFTSVFVYFFALFKASSLRRNYIMLA 73 
P19739      1 MALGLFTLQLV-------SAVNQSLSNAKVSAEVSRQVIQDVKDGTVTFNLLAYTLMSLFVVYFALFKARSHRGRAALIV 73  Human coronavirus ...
Q9YRA6     81 FKILSMTLLGPMLIVYGYYIDGIVTTIVLSLRFAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSShssiYVTLYG 160 Transmissible gast...
Q0Q465     74 ARLLALLIYAPILIFCGAYLDAFIVVATLTSRLLFLTYYSWRYKTYKFLIYNSSTLMFLHGHANYYNGRP----YVMLEG 149 Scotophilus bat co...
NP_598311  74 ARFAVVFLYCPLLYYCGALLDATIICCALIGRLCLVCFYSWRYKNALFIIFNTTTLSFLNGKAAYYDGKS----IVILEG 149
P19739     74 FKILILFVYVPLLYWSQAYIYATLIAVILLGRFFHTAWHCWLYKTWDFIVFNVTTLCYAR-------------------- 133 Human coronavirus ...
Q9YRA6    161 GINYMFVNDLTLHFVDPMLVSIAIRGLAHADLTVVRAVELLNGDFIYVFSQEPVVGVYNAAFSQSVLneidlkeeegDRT 240 Transmissible gast...
Q0Q465    150 GSHYVTLGTDIVPFVSRSNLYLAIRGSAESDIQLLRTVELLDGNYLYIFSSCQVVGVTNSGFEEIQL----------DEY 219 Scotophilus bat co...
NP_598311 150 GDHYITFGNSFVAFVSNIDLYLAIRGRQEADLHLLRTVELLDGKKLYVFSQHQIVGITNAAFDSIQL----------DEY 219
P19739        --------------------------------------------------------------------------------     Human coronavirus ...
Q9YRA6    241 YDVS 244 Transmissible gastroenteritis virus
Q0Q465    220 ATIS 223 Scotophilus bat coronavirus 512
NP_598311 220 ATIS 223
P19739        ----     Human coronavirus 229E
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