Conserved Protein Domain Family
Pyr_excise

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pfam03013: Pyr_excise (This model is not part of the current CDD release)
Pyrimidine dimer DNA glycosylase
Pyrimidine dimer DNA glycosylases excise pyrimidine dimers by hydrolyzis of the glycosylic bond of the 5' pyrimidine, followed by the intra-pyrimidine phosphodiester bond. Pyrimidine dimers are the major UV-lesions of DNA.
Statistics
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PSSM-Id: 515333
Aligned: 73 rows
Threshold Bit Score: 54.2128
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_004324221   1 MNIFVT---------------DPcprksaQVLPDKHVVKMPLETCQMLSIVFshwyydwgddllkkkdgtpykTSKGAFR 65 
ODA71084       1 MQTFLP---------------CPgfhrsaSVLDRRRLGKQRVEALQVLRGLI---------------------VPGYGWR 44 
WP_235030224   1 MQTFLP---------------YPdfaasaTVLDPLRRGRQRVEALQVLRALT---------------------------- 37  Nonomuraea solani
WP_013336081   1 MQVFRP---------------YIdhqrsaRFLDDLRLGKQRVETKQVILAILrkln--------------vlkDGKIGWL 51  Vulcanisaeta di...
XP_004336008   1 MQTFLPfllvwdesktvlenlQAcfrltaQLLDNKRTGKQRVEAMQLLNILLg-------------------rNADSSWK 61 
YP_009174531   2 VNTFVP---------------STcvkecaRLLDWRRLGKQRVEAFQIWKAIT---------------------GQTKGWK 45 
ORZ04279       2 VNNFLI---------------SQifsdtaKILDNKRLGKQRVETFQIINILDkkik-------------kgnkKKRIGFV 53 
YP_009001354   2 VNTFIL---------------CSdfsesaSLLDDKRLFKQCVEARQIISILEes------------------nLSKKGFS 48 
WP_013193841   1 MQTFLP---------------YPsfidsaKSLDSKRLGKQRVEAYQILKNLV---------------------RERDRWY 44  Methanohalobium...
3_pfamImport   1 MQTFLVa---------------------pRNLDPKRLANQINECQSIWVALT----------------------EGRGYI 37 
YP_004324221  66 NHPCTQWAAKSly-nTAWLIQHGCALSTEYTHR--YGKEHGCRD 106
ODA71084      45 RHPAVLMWTGC----EEALVRYGLEICRVWRDRg-HQDGCAATL 83 
WP_235030224  38 -------VPGY----EEALVRYGLEMCGHWCSLg-RPDTCAATM 69  Nonomuraea solani
WP_013336081  52 NHPIVVMYFNNgrpyLDDLIRYFYSVVDEWERRg-FVNKISLDD 94  Vulcanisaeta distributa
XP_004336008  62 RHPVLHMWKPW----TEALKLYYNCFLEEWMARg-FVNNLPLED 100
YP_009174531  46 NHPAAKAWEGH----QCALAFYHNTMIQEWIDRg-YNNTMKFLP 84 
ORZ04279      54 NHPAVKAWDGH----SDALKLYCNAMLEEWEHRg-FKNNMAYYD 92 
YP_009001354  49 NHPATKQWIGY----LDGLKYYFNCHLDEVFRRgrWNVKVMTIY 88 
WP_013193841  45 NHPAVQMWLNY----EEALKLYYDTILIEWIKRg-YENNMPFML 83  Methanohalobium evestigatum
3_pfamImport  38 NHPATLMWDGY----LIALAQYAVAMCEEHERRt-MSTHALHEN 76 
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