3IV9,2O2K


Conserved Protein Domain Family
Met_synt_B12

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pfam02965: Met_synt_B12 (This model is not part of the current CDD release)
Vitamin B12 dependent methionine synthase, activation domain
Statistics
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PSSM-Id: 515311
Aligned: 255 rows
Threshold Bit Score: 121.812
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3IV9_A          289 SIETLRNYIDWTPFFMTWSLAGK-Y-----PRILEDEVVGVEAQRLFKDANDMLD--KLSAEKTLNPRGVVGLFPANRV- 359  Escherichia...
2_pfamImport      1 TVQELIERMDWTPFFHAWELHGT-WdrarrEFRTKDPSKAEAAAALYQDALRLLE--QAVKENRYQARGVIGIFPANSTa 77  
WP_015706351    940 ALERVIPFIDWEGFLRIWEL----------DREQHSPEKDVAKEKLLEDARKILD--QVRTEKLLQLRGVAGIFPACAD- 1006 Treponema p...
WP_013970204    978 PLESLVPYIDWSYFFYGWDLGHG-F-----ERILEDPEKGEAARKLYDDAQVLLD--RLVSEHILTAHGVAGFFSAQSL- 1048 Gracilinema...
WP_021987413    926 DLGELAERIDWTPFFHFWGFKGK-F-----PEIIY---TREEAEKTYQAALEMLG--RIIAGQEFDASLVVRFFNAHTE- 993  uncultured ...
jgi:Odosp_3416  927 DLQDLIAKIDWTPFFHFWGFKGK-F-----PEIIH---QHEEADRTYQAALEMLG--TVIAGNEFEASIVVNFFDAYAE- 994 
WP_014270523    934 ALDELLPLVNWKMYSTSWKVPVGtS----------------ESEKLISDALEMLAdpQIIRLLESGCKAVCGLFPATS-- 995  Sphaerochae...
CCZ98408        931 PICDVIPYIDWSYFISSWGLKGR-W-----PEILFSSDKGEEARKLVDDAQTMLY--RIGREKLLTLNAVVGIFPAFSR- 1001
CDE64221        487 SIADVEPLIDWNFFFPAWGLKGR-V-----PEIFENPEHGAEARKLYDDAQKMLA--RIREEKLLTLQGVAGIFAAVSR- 557 
WP_014623889    931 GVAEVRPYLDWRMFYKGWGLPARtpe-------rmREAERAEAVRLREEAEGVLA--RMEGRV--RIEGVVGFFPARDV- 998  Spirochaeta...
3IV9_A          360 -GDD-IEIYRDETRTH-----------VINV--SHHLRQQ--TEKT-GFAN---YCLADFVAPKLSGKaD---------- 408  Escherichia...
2_pfamImport     78 sHDD-ITVWADESRTI-----------PLAT--LLTQRQQ--LDKQ-GKPR---LALADFIAP--EGVrD---------- 125 
WP_015706351   1007 -GDD-VLVY----GSGp---------ePV-R--FAFLRNQ--EKK---RAGganLCLADFLPSGHSGGgNpgasprdgnp 1063 Treponema p...
WP_013970204   1049 -GDD-ILLF----SADpsgadlngfgtPIAR--FSFLRNQ--EKK---LAGgfnPCLSDFIAPESSGRtD---------- 1105 Gracilinema...
WP_021987413    994 --NDtIIL--------------------DNGhrLPMLRQQ--------SDSpvcLCLSDFISPQADQPs----------- 1032 uncultured ...
jgi:Odosp_3416  995 --DDeIVL--------------------DNGhrLPMLRQQ--------KAGqecLSLSDYICPKAYGTs----------- 1033
WP_014270523    996 --DR-MTVS-------------------AGTgkFHFLRNE--------STG---LCLADYVAK-ES---D---------- 1028 Sphaerochae...
CCZ98408       1002 -GDD-IVV--ERE---------------GRKvvLPQLRCQsaSA----AEN---LSLADYVLPEGEGD-D---------- 1044
CDE64221        558 -GDD-IVVT-GPK---------------DKKyiLPMLRSQapVRE---AQA---RCLADFIADEKAGRtD---------- 603 
WP_014623889    999 -GED-CIGvlgw-----------ggegVIRR--LPMLRQQ--AV-KeGEPT---RSLVDFLPHEGH---D---------- 1044 Spirochaeta...
3IV9_A          409 ---------------YIGAFAVTGGLEEDALADAFEAQH---D--DYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAP 468  Escherichia...
2_pfamImport    126 ---------------YVGAMAVSI-HGSRRWAKEWEARN---D--SYRALLVSSLADRLVEAFAAIAHDKLRL-LWNIPE 183 
WP_015706351   1064 gvssgdgnpgvsgggWLGLFALSAGFGLEEAAAAFRSRN---D--DYGALLLGTLADSLAEAFAEEVHLRIRREWWGYGE 1138 Treponema p...
WP_013970204   1106 ---------------WIGLFAVTAGHGLETFVADCKARG---D--DYTALLAASLADRLAEAFAEKLHALVRTELWGYVA 1165 Gracilinema...
WP_021987413   1033 ---------------TIGVFCLKV-----------SDRHncpDcrDFEHLLRESLCARLTEALAVWMQEQVND------- 1079 uncultured ...
jgi:Odosp_3416 1034 ---------------TIGLFALKV-----------ADKQggcDchDFSHLLRESLCARLTEALAEWMQEQLSE------- 1080
WP_014270523   1029 ---------------TVGLFVVSSSLSIGEYLKELKEKG---D--DYRALSLQLICDRLVEVLAEKTERFLA-DRWGSK- 1086 Sphaerochae...
CCZ98408       1045 ---------------YVCLFAASAGFGLHELVTGLRESG---D--EYGAILAKLLADRLAEAFAEALHVAVRRDLWGFEA 1104
CDE64221        604 ---------------YIGAFALTGGIGLKELTEKFRAEG---D--DYNAILSKLLADRLTEALCEWVHIFIRRQMWGYET 663 
WP_014623889   1045 ---------------YLGLFVITAGKDIERFLA----EEgpgE--PYRELMVRLLADRLAEAASEYLHMLVRTTLWGYAP 1103 Spirochaeta...
3IV9_A          469 NENLSNEELIRENYQGIRPAPGYPACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQ 548  Escherichia...
2_pfamImport    184 GS-------------GVRPACGYPSQPDHQEKETVFTLLHAREEAGMSLTETWMMQPVSSVCALVFSHPESTYFSVGVTG 250 
WP_015706351   1139 GETLSVEDVFKGKYSGIRPAFGYPPCPDHQDKRIAFDLLEAQKRCGLTLTESAMIIPAASVCGMVFSNPEARYFSAAPVG 1218 Treponema p...
WP_013970204   1166 EENLNAKELFEGKYRGIRPAFGYPACPDHHDKRIACKVLEAEQRCGIKLTESSMMQPAASVCGMYFAHPASYYFGVGRVG 1245 Gracilinema...
WP_021987413   1080 --GLQM----------IRPAFGYPACPDHSLKKEVFELLDAPEKIGVTLTPSYAITPSTSICGMLIAHPEARYFGIGEIG 1147 uncultured ...
jgi:Odosp_3416 1081 --GLSL----------IRPAFGYSACPDHSLKKDVFDLLDAPSKIGVSLTTSYAIYPTTSLCGMLIAHPAARYFSIGKIG 1148
WP_014270523   1087 --NLGF----------IRPAPGYPAWSDHSEKKGIFDLLGATDAIGVRLTENFAMDPSSSICAMVFGGDDPRYFSVGNVS 1154 Sphaerochae...
CCZ98408       1105 GETMPVQEVLAGNYQGARMAFGYPAVPDHSLKKEVFRLLDAERITGMKLTDSYMIDPGESLCGMILADRHLKYFDVGKID 1184
CDE64221        664 GPALTPEQIIRSKYRGRRMAFGYPACPDHSLKREVFDLLAADKTTAMRLNDNYMITPEEALCGLFFAD--AEYFSVGRID 741 
WP_014623889   1104 EEHLSPEEVLAGRYRGIRPAPGHAACPDHSLKQDIFELLGAEARLEVRLTESFMMVPPSSVAGFYFSHPESRYFAVGRIT 1183 Spirochaeta...
3IV9_A          549 RDQVEDYARRKG 560  Escherichia coli
2_pfamImport    251 EDQQEDYASRKR 262 
WP_015706351   1219 DDQLQDWAKRKG 1230 Treponema primitia
WP_013970204   1246 EDQLEDWARRKG 1257 Gracilinema caldarium
WP_021987413   1148 PDQFAAYCKNKG 1159 uncultured Culturomica sp.
jgi:Odosp_3416 1149 ADQLTDYCTKRA 1160
WP_014270523   1155 QEQLDQYAKAKG 1166 Sphaerochaeta pleomorpha
CCZ98408       1185 AEQLADYARRRR 1196
CDE64221        742 REQLADYAARRN 753 
WP_014623889   1184 EEQLRDYARRRE 1195 Spirochaeta thermophila
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