6URE


Conserved Protein Domain Family
SAM_BAF

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pfam02961: SAM_BAF (This model is not part of the current CDD release)
Barrier to autointegration factor
The BAF protein has a SAM-domain-like bundle of orthogonally packed alpha-hairpins - one classic and one pseudo helix-hairpin-helix motif. The protein is involved in the prevention of retroviral DNA integration.
Statistics
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PSSM-Id: 515309
Aligned: 39 rows
Threshold Bit Score: 124.215
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6URE_A        1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWLKDTC-GANAKQSRDCFG 79  human
XP_018648158  1 MTTSQKHRSFVSEPISEKVVEELPGIGEKLGERLKAKGYDKAYVVLGQFLLLRCEEELFKEWLSQTC-GANSKQSGDCYT 79 
Q1L957        1 MTTSQKHRRFCCEPMGDKLVYDLPGIGPVLGGRLQNKGLIRARDVLGRFLILNKDEWKFKSWLRDSC-GANAKQQRDCYN 79  zebrafish
8_pfamImport  1 MTTSQKHKDFICKPMVDKAVETLPGIGKVLGGRLRANGYGKVKNVENQFLLLGKDAAAFRQWLRDTC-GANTKQSGDCYK 79 
XP_008216412  6 PTTSQKHRDFTSEPMRNKSVNALPGVGGVLGERLKTSGYSKAKNVLGEYLVRDENKASFQGWMKDQV-GANQKQSGDTYN 84 
XP_029848653  2 STTSQKRRNFVSEPMGNKHVSTLPGIGEALGERLERRGYDKASKLLGEFLVHNKDKTLFTETLQKNC-GANRKQASDCYD 80 
XP_004343428  3 ETTSQKHQNFIKEQMRDKPVNQVAGIGEKISGELNDQGFKYAYQLLGQFLILNKNEGDFLDWFKEVApSANSKHRQDAYE 82 
EDO30608      1 M-TTIKHENFVGEPMGRKAVDKVPGIGPEHKKELARKGIHYAYQLLGEFLIRNMEKERFEDYIMEI--GANIKQKKDCYE 77 
EDO38036      1 M-TTKKHENFVGEPMGRKAVDKVPGIGPEHKKELERKGIHYAHQLLGEYLVCNMDKGKFGDYIMRI--GANNKEKNGCFE 77 
XP_014353405  1 MTTSHKHKGFIRKPMEDKAVEALPGIGKVLGGRLRHNGYGKAKNVLRQFRVLKKKERAFEDWLKDTC-GANMKQAADCYE 79  coelacanth
6URE_A       80 CLREWCDAF 88  human
XP_018648158 80 ALKDWCSCF 88 
Q1L957       80 CLREWTSNN 88  zebrafish
8_pfamImport 80 CLYELCNLC 88 
XP_008216412 85 SLQEYQRNF 93 
XP_029848653 81 ALKDWSDAF 89 
XP_004343428 83 CLSKWCELM 91 
EDO30608     78 AMKEWCDEH 86 
EDO38036     78 AMKGWCDEH 86 
XP_014353405 80 GLLEWSRRH 88  coelacanth
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