Conserved Protein Domain Family
Integrase_DNA

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pfam02920: Integrase_DNA 
DNA binding domain of tn916 integrase
Statistics
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PSSM-Id: 397184
Aligned: 36 rows
Threshold Bit Score: 63.7593
Threshold Setting Gi: 524128789
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CDC06949            4 ATDERKDPKGRKLRIGESYDEkSGRYRYTYTNpVTGVRTSVYAWTLTkndkmpigksgkSLREREDEVNAEI 75  Lachnospiraceae ba...
WP_118375182        2 ARPKRKDKTRTVLRTGELQRS-DGSYQYSWTD-ENHKRRYVYSKTLE------------ALRIKEEAIEKDK 59  [Eubacterium] rectale
WP_003525166        2 AKAKRRDKSRVVLRTGESQRA-DGTYHYCWTD-ANRKRRYVYAKTLD------------ELRYKEEQIEKDK 59  Enterocloster clos...
CBL41542            8 MKDSRKDSKGRVLKDGESQRK-DGSYEYKGAD---GRRHSVYAGTLK------------ELREKRKQAEKNV 63  butyrate-producing...
BAG08350            1 MVKRRKDSKGVVLKDGEYQRS-NGTYEFKWQD-KIGRRKSIYAKTLK------------ELREKELDILRNT 58  Finegoldia magna A...
CDC41078            1 MIEKRKDSKGRILKDGEIERK-DGRYEYRYKG-RDGKRKSIYAKNLK------------ELREKEIVQQKEM 58  Clostridium sp. CA...
CBL42867            4 MAVSRKDPKGRKLREGESWRN-DGRYSYRFTDiRTGKRRTIYAQDLP------------ELREKEKKIAKDM 62  butyrate-producing...
wucgs:EUBREC_3613   2 IDMARKDNKGRNLKTGEYQRP-DGRYEYRYKDeITGKRNSVYAADLA------------SLREMEKKINKDM 60  [Eubacterium] rect...
jgi:Closa_1099      1 MAKARKDNKGRNLRPGETQRA-DGSYMYVYK--LGTKKKYIYDADLA------------ELRKKEGGINKDK 57  [Clostridium] sacc...
CCX60139            1 MVEKRKDSKGRNLRTGEYYDAkNKRYMFRKM--IDGERVTITAADLV------------ELRTQEHELLCRM 58  Blautia hydrogenot...
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