6CNM,5WBX


Conserved Protein Domain Family
CaMBD

?
pfam02888: CaMBD (This model is not part of the current CDD release)
Calmodulin binding domain
Small-conductance Ca2+-activated K+ channels (SK channels) are independent of voltage and gated solely by intracellular Ca2+. These membrane channels are heteromeric complexes that comprise pore-forming alpha-subunits and the Ca2+-binding protein calmodulin (CaM). CaM binds to the SK channel through this the CaM-binding domain (CaMBD), which is located in an intracellular region of the alpha-subunit immediately carboxy-terminal to the pore. Channel opening is triggered when Ca2+ binds the EF hands in the N-lobe of CaM. The structure of this domain complexed with CaM is known. This domain forms an elongated dimer with a CaM molecule bound at each end; each CaM wraps around three alpha-helices, two from one CaMBD subunit and one from the other.
Statistics
?
PSSM-Id: 515257
Aligned: 19 rows
Threshold Bit Score: 83.5154
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6CNM_A       304 DIQYTKEMKESAARVLQEAW-MFYKHTR------RKESHAARRHQRKLLAAINAFRQVRLKHRKLREQVNSMVDISKMH 375 human
XP_009030617 299 DNQLSKKLKHAAANVLRETW-FIYKYTIla---dKLDARKIRRHQAKFLTAIHTLRDIRSKLRTLNDNANTMMDVSRHL 373
XP_008111977 239 DIQCAKEMKCSAANVLQEAW-LLYKHTk------RKDGRRARKHHRRLLAAIHMFRHVRMKHRKIRDRVNTMVDISKMQ 310
XP_028920359 303 DIQCAKEMKESAARVLQEAW-HFFKHGr------RKEQGASRTHQRRLLAAIHEFRQVRLKHRKLRDQVNSLVDISKMH 374
XP_040022237 348 NTKLSKRVRHAAANVVRECW-LLHRTTp------KGNPAEHRRHQRCLLDAIAVFHHLRFKEKMLSDYISEMADLSKMQ 419
3_pfamImport   1 DIQVSKEIQVAAANVLRECW-LLHRSNRs-----KRQGLENRQRQRHLLEAIRIFRYVRLRQRKLRDHANEMVDLSKLQ 73 
Q11122       559 DSKLAREHKEAAARVLQHTW-HIHKCLQg----sDGGNRRLRTYQRKFLKAIHKFRSVKSEMREFSE--NNSQNNPQMT 630 Caenorhabditis e...
NP_001256595 308 ENNITNEHKNAAACVLQNTWrTVLRARDyqksssRRNQQRLAKMQRMLLCSVITFRKTRWKLRMQMEDEDDFFTARRAF 386
XP_011418649 337 DVNLDKRLKNEAANVMKSGW-FIYKFRKl-----KANSSMALSYQTKLLEAIYNIRQIKAAQRRLVDASITMTEVNKTQ 409
XP_002639529 752 DTQLTRQLKHSAANVLRETW-FIYKYRKli---eKPDHSKIRKHTRKFLLAIYEMRRVRRDQRKLAENLVSLGDVAKTS 826
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap