2ZYZ,1A79,5X89,3P1Z,2CV8,5X89


Conserved Protein Domain Family
tRNA_int_endo_N

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pfam02778: tRNA_int_endo_N 
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tRNA intron endonuclease, N-terminal domain
Members of this family cleave pre tRNA at the 5' and 3' splice sites to release the intron EC:3.1.27.9.
Statistics
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PSSM-Id: 397071
Aligned: 43 rows
Threshold Bit Score: 44.1263
Threshold Setting Gi: 160380654
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2ZYZ_D          1 MIGYLRGLAVIVE-----DVEFARR---LYKEGFYGRflgydkvkrdeveKINAPLILGLYEALYLAEK-GRLKVMgEDG 71  Pyrobaculum ae...
Q2FKW0        172 APGLLSSISVIIN-------AGADL---GYDQAFYGKr------------LDDSRIVLSTVEAAYLIEQ-GLVTIQ-LGE 227 Methanospirill...
jgi:Mboo_0655 189 AESVLVGRSAMIR-------VPLQS---DLERAGFGKr------------LDDERLMLAPVELLYLMDC-GVLKAK-RDG 244 Methanoregula ...
ABK77764        9 VEGELSRDLAIIS-----DDSMRHE----LETRGYGE-------------VDKKRFYLRPFESLYLLFY-GRLKLA-KSG 64  Cenarchaeum sy...
jgi:Nmar_0450  19 VRGTLVSDQACIS-----DKKMIHE----LELKGYGE-------------IEKEKFFLKQFETLYLLYT-NKLILK-KGK 74  Nitrosopumilus...
WP_011839277    7 VWFDQSKCIGIVK-----DKKSINN----LEKKWFGR-------------LEGENLVLDIVELAYLLLH-GRIRLVlEGL 63  Staphylothermu...
Q5ZIN2        253 VQEEEESSLCPEEgsareQENFVKKeklVCRRNPF---------------RIFEYLQLSLEEAFFLVYAlGCLTVY-YGE 316 chicken
Q9M1E8         35 ALGFLSSCNVLLS-----VESEEAE---LLDRCCFGRlvv-------gaeKDKRWIQLSFEEAFFLFYKlKCIKIClHGR 99  thale cress
Q9HN82          1 MDGDLRGDTVHIG-----G-DARQR---FHDARGYGYp------------LGGNDIAVSLVEAAHLLFR-GDLDSV---- 54  Halobacterium ...
5X89_A        193 RAKVFEGGSLVSK-----DYEDLKR-------RYFGT-------------EHGNVLFLDPFETVYLTEK-GEIDPEtPEG 246 Methanopyrus k...
2ZYZ_D         72 REVAPEELA 80  Pyrobaculum aerophilum
Q2FKW0        228 ATLTAEEYC 236 Methanospirillum hungatei JF-1
jgi:Mboo_0655 245 AFISTADYF 253 Methanoregula boonei 6A8
ABK77764       65 KAIGFESML 73  Cenarchaeum symbiosum A
jgi:Nmar_0450  75 KEIDFDFFM 83  Nitrosopumilus maritimus SCM1
WP_011839277   64 EITTYNEFL 72  Staphylothermus marinus
Q5ZIN2        317 EPLTILKLW 325 chicken
Q9M1E8        100 SLENEVDLW 108 thale cress
Q9HN82         55 DGMGFRAFL 63  Halobacterium salinarum NRC-1
5X89_A        247 EPMSVEELL 255 Methanopyrus kandleri AV19
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