6VDE,1TAQ,6C36


Conserved Protein Domain Family
5_3_exonuc_N

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pfam02739: 5_3_exonuc_N (This model is not part of the current CDD release)
5'-3' exonuclease, N-terminal resolvase-like domain
Statistics
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PSSM-Id: 515145
Aligned: 633 rows
Threshold Bit Score: 92.5907
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6VDE_A        21 TLMLLDGNSLAFRAFYA-Lpa------enFKTQ------SG-LTTNAV--------YGFTAMLINLLRD-----EQPt-- 71   Mycolicibacter...
CDE44760       4 KVVIIDGQSFFKEIFYQ--------------IPdfkrimN--KVDNAV--------CEFMQSMLCIIEK-----EEP--- 51  
Q38CK4         7 AVVLIDGPALIHRWYYRwL----------YTNRnnpvdvKRfAITNARhtiaiahsFDPSHLMQHLLSPqveytHTPkhn 76   Trypanosoma br...
WP_234858201   1 MLIDGHSMAFRAFYALP-Aek------fsTSSG------QC-TNAVYG--------FVSMLSNLISKEK-----PTHi-- 51   Corynebacteriu...
WP_257992198   8 LLLVDGMALLFRAFFATavtg-----qfmINSK------GV-PTNAIQ--------GFLKHFFTAVSSF-----KPTh-- 60   Bacillus infantis
WP_265078040   1 MLLDGASLWFRSFFALP-Ekm-------tAPDG------RP-VNAVRG--------FLDTIATLVTREE-----PTR--- 49   Gordonia polyi...
WP_302364547   1 MLLDGASLWFRSYFGVP-Dsi-------tSPDG------RP-VNAVRG--------FLDTVSQLITLYR-----PHR--- 49   Mycobacteroide...
WP_353388103   1 MLLDTPSLYFRAFHGVP-Esv-------tAPDG------TP-VNAVRG--------LIDMITTLVRRRS-----PAR--- 49   Thermobispora ...
XP_006575022 115 RVMIIDGTSIIHRAYYkllaklhhghlthA-DG------NG-DWVLMM--------FTALSLIIDVLK------FIPs-- 170 
XP_008658723  93 RIMLVDGTSMMYRSYYkilaqlqhgqlehA-DG------NG-DWVLTI--------FKALSLLLDMLE------FIPs-- 148  Zea mays
6VDE_A        72 H-IAAAFD-V-S-RqTFRKDKYPEYKEGR----------------------SATPDEFRGQIDITKEVL-GAL------- 117  Mycolicibacter...
CDE44760      52 ShLFVVFSeE-------KTESENT---------------------------GDLPISYTRQMKQIKDLL-EKL------- 89  
Q38CK4        77 K-LIICFDqG---DgG-RREIYPKYKLNR------------------------EGREVGEELGVIQKVAtKVFlgepknt 127  Trypanosoma br...
WP_234858201  52 A-AAFDVG-RtT-F-RSEMFPEYKAQRES----------------------APEEFKGQVGLIKQLLET-LGI------- 97   Corynebacteriu...
WP_257992198  61 V-AVCWDM-G-S-KtFRTEMFSDYKANRS----------------------DAPIELLPQFDLVKEAVE-ALD------- 106  Bacillus infantis
WP_265078040  50 LvVCLDLD-W-RpSfRTDLIPSYKAHRVAqpggdahgs----gsttvdieeVPDTLTPQVDMILDVLAA-AGI------- 115  Gordonia polyi...
WP_302364547  50 LaVCLDLD-W-RpAwRVAAIPSYKAHRVVtddplagrpsdtvgaqnvdieeVPDELTPQVDMIADILDA-FGI------- 119  Mycobacteroide...
WP_353388103  50 IaACMDAD-W-RpAfRVAVLPAYKAHRVAadgv---------------teqVPEALTAQLPVIEQVLDA-VGI------- 104  Thermobispora ...
XP_006575022 171 H-VVVVFD---HdGqNFRHNLYPAYKSNR----------------------PPTPDTIVQGLQYFKASI-KAM------- 216 
XP_008658723 149 H-AAVVFD---HdGmTFRHMLYPAYKSNR----------------------TPTPDTVVQGMQYLKASI-KAM------- 194  Zea mays
6VDE_A       118 ---------GITVLAEPGFEADDIIATL-ATQa--eQ-Egy-rVLVVTGDRDSLQLVs-------dQ------VTVLYpr 170  Mycolicibacter...
CDE44760      90 ---------EISVVQEKDAETCDIVSTIlAQNtkqwEkV-----LIYSNNVKMLQMVsentevifsSilreedFKIYS-- 153 
Q38CK4       128 llivphfdsKLKNV---NAEADDMISTL-AQHtqriRiP----TVIMSHDHDLYQLIde------aSrcyyydIRTKHl- 192  Trypanosoma br...
WP_234858201  98 ---------ATLEKENYEADDIIATLAT-EATa--eG-DfetlIVTGDRDSFQLVNSa-------tT------VLYPMkg 151  Corynebacteriu...
WP_257992198 107 ---------IPNIGLAGFEADDCIGTIA-KKLqp---eAr--vSILTGDQDILQLLDed-----isV------ILLKKgf 160  Bacillus infantis
WP_265078040 116 ---------ATSGAAGCEADDVIGTLAF-AES----TdDv--iVVSGDRDLLQVVAD---------Dpvr-vrVLYVGrg 169  Gordonia polyi...
WP_302364547 120 ---------ASAGAAGFEADDVLGTLAA-NER----RdPv--iVVSGDRDLLQVVAD---------Vpvp-vrVFYMGrg 173  Mycobacteroide...
WP_353388103 105 ---------ARIGVPGYEADDVIGTLTA-RAT----GaVe---IVTGDRDLFQLVDD---------Akp--crVLYTArg 156  Thermobispora ...
XP_006575022 217 ---------SIKIIEVPGVEADDVIGTL-ALRsvdaGyK----VRVVSPDKDFFQILs-------pS------LRLLRia 269 
XP_008658723 195 ---------SIKVIEVPGVEADDVIGTL-AINsvsaGyK----VRIVSPDKDFFQILs-------pS------LRLLRia 247  Zea mays
6VDE_A       171 --kgVSe-LTrFTPDAVVEKYG 189  Mycolicibacterium smegmatis
CDE44760     154 -------------EEKVIEEYG 162 
Q38CK4       193 -----------ISEKGVIERLG 203  Trypanosoma brucei
WP_234858201 152 vsvlH---RFtPEAVEEKYGLT 170  Corynebacterium argentoratense
WP_257992198 161 g-nyLVh----TADTFYEEKGI 177  Bacillus infantis
WP_265078040 170 --laKAemMG-PVEVGEKYGVP 188  Gordonia polyisoprenivorans
WP_302364547 174 --faKAtlFG-PTEVAEQYGVP 192  Mycobacteroides abscessus
WP_353388103 157 --vrALqvVD-EAFITERYGIp 175  Thermobispora bispora
XP_006575022 270 --prGDemVS-FGVEDFEERYG 288 
XP_008658723 248 --prGSgmVS-FGVEDFVKRYG 266  Zea mays
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