6VDE,1TAQ,6C36


Conserved Protein Domain Family
5_3_exonuc_N

?
pfam02739: 5_3_exonuc_N 
5'-3' exonuclease, N-terminal resolvase-like domain
Statistics
?
PSSM-Id: 397039
Aligned: 757 rows
Threshold Bit Score: 95.9287
Threshold Setting Gi: 502592664
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6VDE_A          21 TLMLLDGNSLAFRAFYA-L-------PaenFkTQ------SGL-TTN---AVYGFTAMLINLLRD--EQPtH-IAAAFD- 78  
CDE44760         4 KVVIIDGQSFFKEIFYQ---------------IPdfkrimN-K-VDN---AVCEFMQSMLCIIEK--EEP-ShLFVVFSe 60   Clostridium ...
IBRC:GU3_06940   1 -MLILDAMNLVRRLHAVqQgqhaqveAq--------------LaATR-----AALVQAAGKLLGR--FSPsH-VVAVFDg 57   Oceanimonas ...
A1SYB8           4 TLLIIDAMNLVRRIYAVqQkqhgdtpTa--------------LiATQ-----STTTNALKKLLRI--HQPtH-AICVFDs 61   Psychromonas...
CCU71998         2 HLLIIDAMNLIRRVYAAlEgge------------------wpVeGTR-----ARSVTIATATAEA--VGAsH-CVVVFEe 55   Thalassolitu...
jgi:Marme_1444   9 KLLLIDGLNLIRRLYAAlEsekddirR---------------IeRVQ-----GACIDAIAKLVKL--FDStH-IAIVFDs 65   Marinomonas ...
CCX49715         3 KLLIVDGSNLLFQMFYG---------------MParivgkSGR-PVH---GTIGFVGALMKIIRM--VRP-ThAVVLFDg 60   Clostridium ...
CDE06618         3 KFLIVDGSNLLFQMFFG---------------MParivngAGK-PIQ---GTLGFVGAFLRMVRM--TRP-ThAAVIFDg 60   Anaerotruncu...
CCA58981         6 PLLLVDGHYLLHRAWYG---------------FAarimsrD---KTIdrtGVFGFTALLRKAQIQha--daSeIFVVFDs 65   Streptomyces...
EHR48401         6 PLLLVDGHNLLWRAAFG-------------F-PAailsrdKTR-DLT---AEFGFFALLRVAIREelSEP-PeVLVVFDg 66   Saccharomono...
6VDE_A          79 VsRqt-fRKDKYPEYKEGR---SATPDEFR---GQIDITKEVLGALGITVLAEPGFEADDIIATL-ATQa--eQegyrVL 148 
CDE44760        61 E------KTESENT--------GDLPISYT---RQMKQIKDLLEKLEISVVQEKDAETCDIVSTIlAQNtkqwEk---vL 120  Clostridium ...
IBRC:GU3_06940  58 A-Peg-fRHRLCPDYKANR---QPMPVALA---GYLGELQQALWQQGIDALLSDSEEADDLVATL-ARRlarhGgh--sI 126  Oceanimonas ...
A1SYB8          62 H-Aps-wRHQIYPEYKQGR---KPIPELLK---QGLPAIQEQFFDLGIDSLVTEEDEADDLIACL-ADKiakqQqk--cI 130  Psychromonas...
CCU71998        56 K-Cet-wRHTLWPDYKLGR---APMAETLQ---AGLPEIRAGLTDAGLTCIDVAGWEADDIVASL-ADRasagGle--vT 124  Thalassolitu...
jgi:Marme_1444  66 P-Ekt-wRHTEYPEYKLGR---APMDDSLF---AAIEGFAKVFRFNHWHCIRLSGWEADDIIATL-ASKsaerGvk--sI 134  Marinomonas ...
CCX49715        61 E-Hen-pRAALDPAYKANRvdySQMAEDDTp-fSQLADIYLALDFMGIKHAETTDCETDDIVAAYvLNRtddaD----IV 133  Clostridium ...
CDE06618        61 E-Hgt-eRNEISSDYKANRrdfTGLPDADSp-fSQLDDICAALDLLGVFRTEAEVYEADDVIASYaIRLggsgEy--rVV 135  Anaerotruncu...
CCA58981        66 E-DgsqaRAGQDSDYKAQR---PAPEPGLI---ESLALVKNALEHTGVRWIEQDGCEADDVIATL-ATGaraaGr--aVD 135  Streptomyces...
EHR48401        67 E-HgaaeRKDSDADYKANRv----LDEAALkplRAIPHVQRALTDYGIAWIEIDTAEADDVIATL-VKVtrnqDperhVR 140  Saccharomono...
6VDE_A         149 VVTGDRDSLQLVs-------dQ------VTVLYprkgvseLTrF-----T-PDA-----VVEKYG 189 
CDE44760       121 IYSNNVKMLQMVsentevifsSilreedFKIYS------------------EEK-----VIEEYG 162  Clostridium sp. CAG:411
IBRC:GU3_06940 127 IVSTDKGFCQLLs-------sK------VQLWDh---------F-----G-QRWlddahVRQKFG 163  Oceanimonas sp. GK1
A1SYB8         131 IVSTDKGFYQLLn-------eS------IQLYDy---------F-----Q-NSFvirqqVHQKMG 167  Psychromonas ingrahamii 37
CCU71998       125 ILSTDKGFCQLVt-------pR------IQLRNh---------F-----D-RTAfdvegVKQKWG 161  Thalassolituus oleivorans M...
jgi:Marme_1444 135 IVSTDKGFTQLLee------pN------IYQYDy---------F-----G-KQGfdkdwVVAKYG 172  Marinomonas mediterranea MMB-1
CCX49715       134 ISSFDSDYFQLIs-------tN------VSVLRyrgk---gttF-----CgEKY-----IWEKFG 172  Clostridium sp. CAG:226
CDE06618       136 VASQDSDLYQLIg-------eN------VSVLRyrgk---kstL-----CdAGY-----VRERFG 174  Anaerotruncus sp. CAG:390
CCA58981       136 IMTTDKDYLQLLtd------pS------VRLLNt--------gL-----A---------MERRYt 166  Streptomyces venezuelae ATC...
EHR48401       141 IMSGDRDFYQLVd-------dR------VHALN-------TVmkrgrrhigPAE-----VADRYG 180  Saccharomonospora marina XMU15
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap