5Y3R


Conserved Protein Domain Family
Ku

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pfam02735: Ku (This model is not part of the current CDD release)
Ku70/Ku80 beta-barrel domain
The Ku heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-binding beta-barrel domain. This domain is found in both the Ku70 and Ku80 proteins that form a DNA binding heterodimer.
Statistics
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PSSM-Id: 515141
Aligned: 183 rows
Threshold Bit Score: 87.2664
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5Y3R_A       230 LNKDIVISVGIYNLVQKaLKPPPIKlyret-------nepvKTktrtfn---------------tstgglLLPSDTKRSQ 287 human
XP_002672413 245 IAGNIKIPVWVYKKTEKtSLPTAKRlslvsrrantggdgdvQMercyysy--------------ddpdnqIEKDKTVKAY 310
XP_002897431 274 FGDTLAIPLYCYLKTKTaTLPTLSKesqnsye--ketagkvKLdrrytsp--------------qnvdqeVPPDEQVKAY 337
XP_004362085 253 ISTEFGIPVWGYLRTKIqTLPTLKKvstvaqqadnpaslevKQeklhysi--------------tdpdkeILDHDLLKGY 318
ERN09272     223 LSNVMKIKVWVYKKSVVeRFPTLKKysdkappnskfsthevKVdfeyksk--------------dnpnniVPPEQRIRGY 288
Q9FQ09       225 INPTMKIKVWVYKKVAEeRLPTLKMysdkapptdkfakhevKVdydykvt--------------aestevIAPEERIKGF 290 thale cress
XP_006339432 225 IGAQLKIKVWVYKKTSEeKFPTLKKysdkapstdkfatheiKVdyeyksi--------------edpnkvVPPEQRIKGF 290
CBI38851     229 LSPKMEIKVWVYKKSAEe-LPVLKLysdeapptdkfathevRVnlqyksv--------------edptkvVPLTQRIQGY 293
XP_028232396 225 ISPKLSIKVMVYKKTTEeKFPSMKKysdkappndkfakhevKIdyehkss--------------kdpdkvVPPDQRIKGY 290
XP_025182335 239 GSASLLIEVELIARTMKaKPKSFKKysal--------aeaaNnienktyevshsrtysitvdenvnekvdVPQDELDKAY 310
5Y3R_A       288 IYGSrQIILEKEETEe--LKRfdDPGLMLMGFKPLVl-LKKHHylrPSLFVYPeesLVIgSStLFSALLIKCLEKEVAAL 364 human
XP_002672413 311 KYGKnFVPFNIVNEKalkYKS--SKGITVLGFTDEKniDRSHFm-aETYSFIAkpdDPFaQI-ALSSFIRALSELEMVMI 386
XP_002897431 338 RYGSeKVPFASADIEffkFQT--EKSLKALGFLDRSqlNHSKFi-aGTDVFIAepgKPHaAT-CFAALIDAMVELDQVII 413
XP_004362085 319 KYGKsIIPYSKIDIEalkLSA--SKCLKTLGFAPAShiPLHHLm-gQTEVLVAppgDQEaAL-ALSGIIHALAETDQVII 394
ERN09272     289 RYGPqVVPISSAELEalkFKP--EKGIKLLGFTNASniRRHQYm-rDTYVFIPepgNRKaIL-AVSTMARAMKNANKVSI 364
Q9FQ09       291 RYGPqVIPISPDQIEtlkFKT--DKGMKLLGFTEASniLRHYYm-kDVNIVVPdpsKEKsVL-AVSAIAREMKETNKVAI 366 thale cress
XP_006339432 291 QYGPqVVPISSAELEavkFKP--EKSVKLLGFTDASnvMRHYYl-kDVNIFIAepgNKKaIL-ALSALARAMKEMNKVAI 366
CBI38851     294 SYGPqVVPISSAEWEavkFEP--EKGVKLLGFTDASniMRHYYk-kDVNIFIAepgNTKaIL-AVSALARAMKEMNKVAI 369
XP_028232396 291 PYGPqIVPISSAEWEavkFKP--EKGVKLMGFTDSSnvFRHHYm-kDVYVFLPepgNTRaMI-AVSAVARAMKEMNKVAI 366
XP_025182335 311 ALGKtFIPLPKQDENifsFET--TPCLSIISFIRTEefRRELVl-sNVFTVVPkkdEPVaAQ-RLSSFIHVLYEKDSFAI 386
5Y3R_A       365 CRYTPRRNIPp-yFVALVPQeeelddqkiqvtpPGFQLVFLPFADDKRk-----mPFt-EKiMATPEQV 426 human
XP_002672413 387 ITYVYRDDLEp-kLGFLYPHigt--------nsECLYFNALPFAEDIReypfksfS---TVk-HSEEQL 442
XP_002897431 414 ARFVPRKNAApkiVALIPHApssg------enfYAMWAQQLPYEEDVRnyefaplkT--RKyTPSSEQQ 474
XP_004362085 395 VRFVKRSNCSp-yLGYLYPHika--------nyECLYFNPLPFIDDIRhyqfppiS---PKnPQCKKQY 451
ERN09272     365 LRCVWRQGQGnvvVGVLTPNlsss-----dnipDSFYFNILPFAEDVRefhfpsfnKlpLSrQPNEKQQ 428
Q9FQ09       367 VRCVWRNGQGnvvVGVLTPNvser-----ddtpDSFYFNVLPFAEDVRefpfpsfnKlpSSwKPDEQQQ 430 thale cress
XP_006339432 367 VRCVWRQGQGnvvVGVLTPNvsdk-----ditpDSFYFNILPFAEDVRefqfpsfsNlpSSmQPNEKQQ 430
CBI38851     370 LRCVWRRKQRnviIGILTPNvsek-----dsvpDSFYFNVLPYAEDVQefqfpsfsNlpLSwQPNEEQQ 433
XP_028232396 367 VRCVWRQGQAnvvIGVLTPNlsdk-----enipDSFYLNVLPFAEDVRefqfpsftNfpASwQPNGQQL 430
XP_025182335 387 VRYVKKPLESp-kLGVLVPYikp--------pkECLYFARIPFKEDYRrftf---psldRIvTKTGKEL 443
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