Conserved Protein Domain Family
RmuC
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pfam02646: RmuC (This model is not part of the current CDD release)
RmuC family
This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures
Links
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Statistics
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PSSM-Id: 515079
Aligned: 243 rows
Threshold Bit Score: 139.948
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
CCY36073     100 EQIKNILDPLGKKMEEFRRAvEDSK-EKSLKNTATLEQQIRSMMEQTAAVGRqadnLATALRsNNKAVGNWGEVVLLNLL 178
Q2RP03        96 ERITDLTRRVGEGLQRSTEK-TAESmQDLRARLATIDAAQKNIAEMSEKMTS----LQDILS-NKQARGAMGQTQMEDLV 169 Rhodospirillum ...
Q6NC52        97 ERLDSVTHRFGQSLTQSTRY-TMQSlQALHERLGIIDRAHDNLTELTDQVTT----LRDVLA-NKQARGAFGQARMETIV 170 Rhodopseudomona...
Q92SH7        90 QRIDGMTHRIGASISEQTKA-THENlRRLQERLAVIDNAQNNIQSLAKDMAG----LQSILA-NKQTRGAFGQSRMEAIV 163 Sinorhizobium m...
Q2YJQ1       102 ERLDGMTHRIGQTMTEQTRS-THENlAKLQERLAVIDTAQNNIQSLAGQVVQ----LQAILA-NKQTRGAFGQSRMEAII 175 Brucella abortu...
AAK86182     100 QRLDGMSQRLGETLTEQTRS-THENlSRLQERLAVIDAAQGNIQDLAKDVVG----LQAILS-NKQTRGAFGQARMETLI 173
WP_244422736  74 QHLEGLSQRVGSTLVEQTKT-TNENlRRLQERLAIIDVAQNNIQNLAKDIVS----LQTILS-NKQTRGAFGQSRMENII 147 Liberibacter cr...
Q5P0F5       100 RRLETLSGHVNERLDEGFRK-TNETfTNVMARLATIDEAQKKIDGLTTNVVS----LQELLG-DKRARGAFGEVQLEALV 173 Aromatoleum aro...
WP_015830380 151 ARLEEIGGKVSERLDEGFKK-TNDTfVRVMERLATIDEAQKKIDGLTTNVVS----LQELLG-DKRSRGAFGEVQLEALV 224 Methylovorus gl...
WP_013029786 131 GRLEQIGGKVNERLDEGFKK-TNETfVSVMARLATIDEAQKKIDGLTTNVVS----LQELLG-DKRSRGAFGEVQLEGLV 204 Sideroxydans li...

CCY36073     179 DGMGLREGedYVKQETIKDVdgnavlsddggrrlIPDVVLYLPEN-KAVVIDSKVSLEGYIAYVNAADET-ERGIALAAH 256
Q2RP03       170 RDLLPPSA--YRFQAKMGNGr-------------IADCLLTLPNPpGAIAIDAKYPLESYRALRAAGS-DaERLQAGRAF 233 Rhodospirillum ...
Q6NC52       171 QDGLPKGS--FAFQYTLSTGk-------------RPDCVVLMPNQ-PPLCIDAKFPLEAVTALREATT-EeAKKAASQRL 233 Rhodopseudomona...
Q92SH7       164 ADGLPMGA--FAFQATLSNGa-------------RPDCTIRMPNGqPPLVIDAKFPLEAWNSMRDAAS-AeRRQQAAQAF 227 Sinorhizobium m...
Q2YJQ1       176 ADGLPQGA--YEFQATLSNSt-------------RPDCLVRMPNNaPSLVIDAKFPLEAWNAMRETEQ-PeARKAAVAQF 239 Brucella abortu...
AAK86182     174 ADALPAGA--FQLQPTLSNGy-------------RPDCIIKMPNNaPALVIDAKFPLEAWNAIKADET-PeTKRAAVQQF 237
WP_244422736 148 IDALPIGT--YTFQPTLSNGs-------------RPDCTVKMPNNaPTLVIDAKFPLEAWNAMRETGE-----NISKTKF 207 Liberibacter cr...
Q5P0F5       174 RNMLPPDS--YEFQHTLPNNt-------------RVDCALRLPEPtGLVGVDSKFPLENYHRMVGQGVSDiDRKLAQTAF 238 Aromatoleum aro...
WP_015830380 225 RNVLPNSG--FAMQHVLPNGt-------------RVDCALFLPEPtGTVAVDSKFPLENYHRMLESGISEvERALAQRQF 289 Methylovorus gl...
WP_013029786 205 RNILSPQA--YEMQYTLPNGs-------------RADCVLKLPEPtGMVAVDSKFPLENYHRMFDAAS-PaERLVAERQF 268 Sideroxydans li...

CCY36073     257 SKSVDAHVRELSAKsysryirstgrdsldY---------VVMFVPNEGAFQLYYQNFREKWHEAFDRGIIIAGESNLFAM 327
Q2RP03       234 AADVLRHVRDIAER---------------YiiadetaesALMFLPAEAVYAELHANYPQVVEQAFRRRVWIVSPTTLMAT 298 Rhodospirillum ...
Q6NC52       234 RTDVMRHVDDIASK---------------YlipgetqdtALMFVPSESVYAEIHDGFDDVIQKAYRARVVLVSPSLLMLA 298 Rhodopseudomona...
Q92SH7       228 RRDMEVHIRDIAGK---------------YllpgetqdtAFLFVPSESIFAEIHEHFEAVVQKAHRQRIVIVSPSLLLLS 292 Sinorhizobium m...
Q2YJQ1       240 RRDMEIHIKDVSDK---------------YlipgetqdtAFLFVPSESIFADIHEHFEALIQRAHRARVVVVSPSLLMLS 304 Brucella abortu...
AAK86182     238 RRDMEVHIRDVAEK---------------YlirgetqdtAFIFVPSESIFADIHQHFEYLVQRAHRARVVIVSPSLLMLS 302
WP_244422736 208 RRDIETHIRDISKK---------------YlipgetqdiAFMFVPSESIFAEIHENFEKLIQTAYRARVIIVSPSILMLS 272 Liberibacter cr...
Q5P0F5       239 RADIRRHVDAIASK---------------YiisdvtsdgAVMFVPAEAVFAEIHAHHPEVVAYAQGRRIWIVSPTTLMAV 303 Aromatoleum aro...
WP_015830380 290 KADVKKHVDDIASK---------------YiipnvtsdgAVMFIPAEAVFAEIHAYHPDVVDYAMAKRVWVVSPTTLMAV 354 Methylovorus gl...
WP_013029786 269 KADVKKHVDDISAK---------------YiipevtsdgAVMFIPAEAVFAEIHAHHSDVVDYAMQRRVWIVSPTTLMAV 333 Sideroxydans li...

CCY36073     328 LKIIENTWVRVRQQKNTEEVMSLAGELLERVTRFTNTFNEVGGVITKAAAKFEDaRKALSgprNSVVVTARRLEKKGI 405
Q2RP03       299 LNTVRAILKDARMNDMAVLIRREVRALIDDVNRLDDRVGKLARHFGQTGEDLRQ-IQIST---EKIMRRGDRIEEVQF 372 Rhodospirillum ru...
Q6NC52       299 IQVMQQILKDARMRDAADQIRTEVLSLGDDLARLRERVTKLQTHFGQVTDDVRQ-ILISA---DKIERRAARIEELDF 372 Rhodopseudomonas ...
Q92SH7       293 IQVIQAILKDARMREQAHLIQSEVVRLMEDLSRLDERVRKLQGHFAMTQKDVED-ILISS---DKLTRRGAKIEALEL 366 Sinorhizobium mel...
Q2YJQ1       305 IQVIQAILKDARMREQAHVIQGEVIRLMEDVGRLDERVRKLQTHFIQANKDIDD-ILVSS---SKVTKRGAKIEALEF 378 Brucella abortus ...
AAK86182     303 VQVIQSVLKDQRMREQAHLIQGEVALLMDDVRRLDDRTRKLQAHFGLAQKDVDM-MLISS---DKVLARGQKIEGLDF 376
WP_244422736 273 IQVIQILLRDYRMREQASLIQIEVTNLIEDILLMDKQTHKLQEHFVHLQKDISL-ILTSS---EKLIKRASKIESIEL 346 Liberibacter cres...
Q5P0F5       304 LNTARAVLKDVETRKQVHVIKDALGKLAKDFARFDERMNALVRHIEQASKDVQD-VQVSS---RKITAHFQKIESAQL 377 Aromatoleum aroma...
WP_015830380 355 LNTARAVLKDVETRKQVHIIKDELGKLGKEFGRFDVRMKKLADHIRQAHEDALD-VHTTS---QKISRRFAQIERVEL 428 Methylovorus gluc...
WP_013029786 334 LNTARAVMKDVETRKQVHIIKDELGKLGKDFGRFDERMKKLAEHIRQANKDVDD-VQISS---RKITEQFARIERVEL 407 Sideroxydans lith...
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