Conserved Protein Domain Family
YceD

?
pfam02620: YceD 
Large ribosomal RNA subunit accumulation protein YceD
This family is nearly universally conserved in bacteria and plants except the Chlorophyceae algae. Thus far, mutantional analysis in bacteria have not established a function. In contrast, mutants have embryo lethal phenotypes in maize and Arabidopsis. In maize, the mutant embryos arrest at an early transition stage.It has been suggested that family members specifically affect 23S rRNA accumulation in plastids as well as bacteria.
Statistics
?
PSSM-Id: 485858
Aligned: 68 rows
Threshold Bit Score: 63.1535
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q6K976       159 LDGIVRTVITLGCYGCAEPAPQGIFANFSLLL-TEDRVEEPDVVDLgtifeeeqtkapsltgsqedgddedidWDDRLHF 237 Japanese rice
Q0K8L6        76 LDVTVEGRIWLDCQRCLAPYAEPIDTATRFEV-VESEEAADAAPMD----------------------------DDEVDV 126 Cupriavidus nec...
Q63S80        80 lRLALHGAAWLECQRCMTPYAQSFDIDVVYRI-VATEEEAEEFPLD----------------------------EDEVDV 130 Burkholderia ps...
Q2KUK8        81 LRLHIKANPVLICQRCNTPFVYPVDTTAVLQL-VESEDDL-DDELAdlqdaq---------------dtgldfATDVPEK 143 Bordetella aviu...
Q126I5        56 LHLQAEAAVPLTCQRCMGVVVTPVQVDQWYRF-VADEDIAMAEDD-----------------------------QSEEDL 105 Polaromonas sp....
WP_011769486  61 FNGKASVAVELICQRCNEPMIYQCEAEFKYCP-VHNQEQ--ENNLP----------------------------DAYEAI 109 Psychromonas in...
P43790        61 MKGKVQIDVDLECQRCNEPYKQTLECEFTYSP-VANWDQ--ADDLP----------------------------EIYEPI 109 Haemophilus inf...
3_pfamImport   1 IHSQLDVEVKMICQRCLEPVVLPIHSECDYAV---VNEGASSLHLP----------------------------KGYDVL 49 
Q21K92        57 MRGSIQGDLKLVCQRCLQPVDYKLDVEVNLAM-VWDEDQ--AKKLP----------------------------GYIEPW 105 Saccharophagus ...
Q2FZF3        54 aDIHITGTYTMPCARTLVPVKVPLDVTTTEVFdLEGYNQYNDDQDD----------------------------VDEHYH 105 Staphylococcus ...
Q6K976       238 PA-GEKEIDISKHIRDIIHLEITLDALCS--P--TCKG--LCLGCGENLNTSSC----------SCNAEKQQAKnvqrRG 300 Japanese rice
Q0K8L6       127 IA-GSKRFSLLDLIEDEVLLALPVAPKH---D--VCPTvhESLVTGSDGEA--Qpe------aePEEEKRPSP-----FA 187 Cupriavidus nec...
Q63S80       131 IV-GSRQFDLVDLIEEELLLSLPLVPRH---E--VCPAvhESLVSGASGPAADTddts---deaAGESDKPNP-----FA 196 Burkholderia ps...
Q2KUK8       144 VV-GSHRFDLLAQVEDELILSIPYVPRHDvcP--ESSGrpAGQQTENKMSQEAGsdd----alqESGFKRPSP-----FA 211 Bordetella aviu...
Q126I5       106 LV-MEPQFDLLAVLEDELLMALPLVPMH---D--ECPVapKLQAGEV------Ei--------gAEAGQKPNP-----FA 160 Polaromonas sp....
WP_011769486 110 YYdENGEVNLHQVVEDELIVTLPQIAKH---AieECQQskFELTFGE------V----------DEEKQRPNP-----FD 165 Psychromonas in...
P43790       110 EFnEFGEIDLIGTVEDELILALPLVPMHSs-E--HCEVsaQEQVFGVLPEE---------------LAKKPNP-----FA 166 Haemophilus inf...
3_pfamImport  50 EV-GEDPLDLLALVEDELLLALPIVPLH---DpeICQPpvGPDEPEP------S----------EDEVTRSNP-----FS 104
Q21K92       106 IV-GEDPEDLHAILEEEVLLALPVVAFHD--E--DCIDasLLSVGEE------V----------KQPEKSENP-----FL 159 Saccharophagus ...
Q2FZF3       106 II-KDGMVNLQDIVEDIVIIEKPMRAYSE-----QSDQmlTVGNGWEVIDEDQLdelakqqeqdDSESRQVDPR----LQ 175 Staphylococcus ...
Q6K976       301 PLKDLL 306 Japanese rice
Q0K8L6       188 ALAGLK 193 Cupriavidus necator H16
Q63S80       197 ALEALK 202 Burkholderia pseudomallei
Q2KUK8       212 VLEQLK 217 Bordetella avium 197N
Q126I5       161 ALAQLK 166 Polaromonas sp. JS666
WP_011769486 166 ALAQLK 171 Psychromonas ingrahamii
P43790       167 VLANLK 172 Haemophilus influenzae Rd KW20
3_pfamImport 105 VLAQLK 110
Q21K92       160 VLAALK 165 Saccharophagus degradans 2-40
Q2FZF3       176 KLqqly 181 Staphylococcus aureus subsp. aureus NCTC 8325
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap