7AFI


Conserved Protein Domain Family
RimP_N

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pfam02576: RimP_N (This model is not part of the current CDD release)
RimP N-terminal domain
This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces..
Statistics
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PSSM-Id: 515027
Aligned: 29 rows
Threshold Bit Score: 65.6933
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7AFI_X  11 MITAPVEALGFELVGIEFIR-GRTSTLRIYID------S-EDG-INVDDCADVSHQVSAVLDV---EDPI--TVAYNLEV 76  Escherichia coli
Q8KFT3  13 TIGELSATSGEEIYVVEAAIrAGGRKIELTVD------T-DKG-VSIDQCAKLSRAIRARLEAc-eEDSMlsSGEFDLMV 83  Chlorobaculum tepidum...
O83863  13 SCAEVVRSLGCALVDLQWSVsAVSRRVQ-QAQgraravIySAGgVTLDVCARVHRILVPRLQAlggVRTV------FLEV 85  Treponema pallidum su...
O51739  14 LIKDLTGRLNVEILEINIFRnKNNGKIQIVLY------S-KNFsLDIDFLTDLHKMILLILEA-----NL--KYGFTLEL 79  Borreliella burgdorfe...
Q9RTG8  14 LADGAVRPLGFEVLEVTQQReGRDLIVLVRID------RlDEQpVTMDDLTAASRAAEAEFDR---VDPI--EEEYRLEF 82  Deinococcus radiodura...
Q8NP37  12 LIEPLAASHKFDLEGLKVTKaGPKSAVAIKVD------S-DSR-PDLDQLEVFSQEIGELFDAaeqRGELnfGAGYTLEV 83  Corynebacterium gluta...
Q8RHJ4  14 IVNPFIEEMNLSLVDVEYVQdGGYWYVRIFIE------NlNGD-LNIEDCSKLSSKIEDKV-----EELI--EHKFFLEV 79  Fusobacterium nucleat...
P32726  12 MAQPIVDSLQLELVDIEFVKeGQSWFLRVFID------S-DDG-VDIEECAKVSEALSEKLDE---ADPI--SQNYFLEV 78  Bacillus subtilis sub...
Q8Y7G0  11 IVAPITDELQLELVDIAFEKeGPNWFLRIFID------K-DGG-VDIDECAAVSEKVSEKMDE---NDPI--TQNYFLEV 77  Listeria monocytogene...
Q9X299  13 EAERIAEEQGLEIFDVQYRReSRGWVLRIIID------N-PVGyVSVRDCELFSREMERFLDR---EDFI--EHSYTLEV 80  Thermotoga maritima MSB8
7AFI_X  77 SSPGLD 82  Escherichia coli
Q8KFT3  84 SSPGIG 89  Chlorobaculum tepidum TLS
O83863  86 GSPG-E 90  Treponema pallidum subsp. pallidum str. Nichols
O51739  80 STPGID 85  Borreliella burgdorferi B31
Q9RTG8  83 ESPGGK 88  Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Q8NP37  84 STPGVD 89  Corynebacterium glutamicum ATCC 13032
Q8RHJ4  80 SSPGLE 85  Fusobacterium nucleatum subsp. nucleatum ATCC 25586
P32726  79 SSPGAE 84  Bacillus subtilis subsp. subtilis str. 168
Q8Y7G0  78 SSPGAE 83  Listeria monocytogenes EGD-e
Q9X299  81 SSPGLD 86  Thermotoga maritima MSB8
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