Conserved Protein Domain Family
YbaB_DNA_bd

?
pfam02575: YbaB_DNA_bd (This model is not part of the current CDD release)
YbaB/EbfC DNA-binding family
This is a family of DNA-binding proteins. Members of this family form homodimers which bind DNA via a tweezer-like structure. The conformation of the DNA is changed when bound to these proteins. In bacteria, these proteins may play a role in DNA replication-recovery following DNA damage.
Statistics
?
PSSM-Id: 515026
Aligned: 579 rows
Threshold Bit Score: 35.1552
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
C1F0Z2          11 SQAKEMQE---QMQEKLAATVVEASS--GGG-AVSV----KMNGKKELLKLTIDPAA-VLslSGanpDVEMLE-DLITAA 78  Acidobacteriu...
EEF26798       311 sNITELQKrinSAQKEISATTFEGKA--ANG-LVKV----QTDGNGQVKRVTFDEGLkGE-------DLETLA-DLVVVA 375
WP_011945095     2 RKLRQLLRqveEAQKQVSQKKYSGSAviEHKkVVTV----ILDGQANVKSISIDLALtSN--TT----SELLE-KLVITA 70  Orientia tsut...
7_pfamImport     1 NKLKKMQKqiqDAQEQIESSEFTGKA--SG---VTV----IMQGTRQVIDVKIDEAL-LE-------EVELLQ-DAILLA 62 
WP_012232893    12 RQAARVQRkidQVKGELKDREVSATA--AGD-KVTV----VVSCEGKVRRIEVDPAFlASegLE-------MAlDAIVAA 77  Sorangium cel...
WP_011451357    10 dLQDALKKklsELKVYQEPKSFEGQS--LGG-RVSVkillSNLVEYKVQEVKVDPALlGEkaFV-------VE-DLIKAA 78  Anaplasma pha...
Q2GI83           9 NLQEMIKKkfsDFQEHQKSQIFEGSS--LGG-KVSVkisvSNMVSYQVVEVKLDPSLlQEkaIL-------IE-DLIKAA 77  Ehrlichia cha...
WP_012887935    17 REVERMADtfaDGTRELDERRVTGAD--GSG-RVVA----TVTGSARLLRVRIDPRAmRDldHV---A---LS-QAVLDA 82  Streptosporan...
80_pfamImport    1 DQVRKQTEevqRIQRSVEAMEVKAHS--RQN-EVTV----VLRGDGRFTSIDIDPRAvRQydAR---N---LS-EIVLEA 66 
105_pfamImport   2 MKIRKMQKemmDAQKRIAETVFTGKS--GGG-MVEI----QMTGEHEVKSVKIDPEA-LEskED----IEMIE-DSLVAA 68 
C1F0Z2          79 INEAGRRAEEILKSSMQGLL-G-GLN 102 Acidobacterium capsulatum ATCC 51196
EEF26798       376 MNDANTQKEAFAKSKLAGMA-T-GLl 399
WP_011945095    71 FNDAFQQINTEASKMMSNML-G-KLt 94  Orientia tsutsugamushi
7_pfamImport    63 VNDALGQIDKTQEETMGQFS-G-GMG 86 
WP_012232893    78 SNSALEAADKLVETEITKVTgGvKLP 103 Sorangium cellulosum
WP_011451357    79 FDDAFRKSMDYNKGFISSLMsfyf-- 102 Anaplasma phagocytophilum
Q2GI83          78 LNDALKKSSDYNKNLVGSLLsfgi-- 101 Ehrlichia chaffeensis str. Arkansas
WP_012887935    83 VGAARRAAAEGLDEILDRLNgGrprp 108 Streptosporangium roseum
80_pfamImport   67 VNNGLQKLAEASSAKFAPVIe----- 87 
105_pfamImport  69 FNDAIKQIERETEKSLGGFS-G---- 89 
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap