5IWX,1T0A,3F6M,4C81


Conserved Protein Domain Family
YgbB

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pfam02542: YgbB (This model is not part of the current CDD release)
YgbB family
The ygbB protein is a putative enzyme of deoxy-xylulose pathway (terpenoid biosynthesis).
Statistics
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PSSM-Id: 515000
Aligned: 544 rows
Threshold Bit Score: 94.7679
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5IWX_A          2 FRIGQGFDVHQLv-----EG-R-----P-------------------------------LIIGGIEIpyeKGLLGH--SD 37  Bacillus subti...
WP_015817222    1 MRIGHGIvca-----qrtQA-R-----K-------------------------------LVLGGVYLepgFGLAIM--ND 36  Teredinibacter...
P75118          3 FRVGLGKKKYRI-------KpRaeqknK-------------------------------FWIGGVEIedsKYIYDHdaSD 44  Mycoplasmoides...
WP_013181423    3 vKSGLGQDSHRFlstdssK--------P-------------------------------CVIGGLIFddaPGFNAN--SD 41  Waddlia chondr...
WP_012993563   17 fITGLGQDHHRFitkepgQ--------TgfdnrgetkmgacldarfrvktadggankygLRLAGVDIdcdCLIEAN--SD 86  Mageeibacillus...
WP_015359940    2 fKVAIGQDSHRFdfdnhdK--------K-------------------------------LVLGGVFFd-gPPLKGN--SD 39  Thermoclostrid...
jgi:Ccel_0344  13 MKVGIGQDSHRFdfqnnsK--------K-------------------------------FILGGVIFddvTPLDGN--SD 51 
WP_003514705    1 MKVGIGQDSHRFdfdnkdK--------K-------------------------------LVLGGVVLegyPPLKGN--SD 39  Acetivibrio th...
WP_014253915    1 MIVGIGQDSHRFdfenteK--------K-------------------------------LILGGVIFddaPPLEGN--SD 39  Acetivibrio cl...
WP_013043387    3 vKTGLGLDSHRFvegetdK--------A-------------------------------FVLGGLVFedaPALAGN--SD 41  Coraliomargari...
5IWX_A         38 --ADVLLHTVADACLGAV---GEGDIGKHF------------PDTDPEFKDA-DSFKLLQHVWGIVK--QKGYVLGNIDC 97  Bacillus subti...
WP_015817222   37 --GDLLLAAVGDALAGAA---GLGNFVSLY------------DLTSPDFKHA-STRSLLQMLATSLR--SKGLRTVNLDI 96  Teredinibacter...
P75118         45 daSDVIQLAVADALFGAT---ALGDGQIVFnkektqiplkgnPRK--------EAPRILARTYNFI---RKNWYINNIDI 110 Mycoplasmoides...
WP_013181423   42 --GDVVLHSLCNAISSLTgekILGGIAEDL------------CLK----DGItDSEVYLKEALKTLG----QQKITHVAI 99  Waddlia chondr...
WP_012993563   87 --GDVVIHALINAISGLGcppFLGKPADAL------------C-R----AGIkDSRVYLAESLRILQeiHPRLTVVHASF 147 Mageeibacillus...
WP_015359940   40 --ADVVLHALTNAISGITgvnILGETADRL------------CLE----QGItDSSVYVREALKYLN----G-EICHVSF 96  Thermoclostrid...
jgi:Ccel_0344  52 --ADVVLHALTNAISGVTcvnILGKVSDEM------------CLE----RGItDSSEYLREALKYLV----DVKVVHVSI 109
WP_003514705   40 --ADVILHSLTNAISGVTcvnILGKISDEL------------CLE----KGItDSKVYLKEALKYLN----GQKIIHVSI 97  Acetivibrio th...
WP_014253915   40 --ADVILHSITNAISGVTcvnILGPVSDDL------------CLN----KGIkDSKVYLKEALKHLN----GRRILHLSI 97  Acetivibrio cl...
WP_013043387   42 --ADVILHALADAISGVTgrtVIGKVADEM------------C-Q----RGItDSKEYLNVALEDLG----DWQISHVSI 98  Coraliomargari...
5IWX_A         98 TI-IAQKPKMLPYIEDMRKRIAEGLEADVSQVNVKATTTEKLGFTGRAEGIAAQATVLIQ 156 Bacillus subtilis subsp. subtilis ...
WP_015817222   97 SL-CGRDLIFNAYRDDMQASIADALGIDATRINLKLSGALLL-PARNDSDVLALATALLd 154 Teredinibacter turnerae
P75118        111 TLeIPSQQKMDDYKHAIFDFICTAL--RITELTINLKVREPL----NPNEISCLAVVLVE 164 Mycoplasmoides pneumoniae M129
WP_013181423  100 SI-EAKKPRFEEKILEMRENIARIMGLSISQVGITAISGEGLTDFGCGDGVQALSIITTT 158 Waddlia chondrophila
WP_012993563  148 SI-EALKPKLWLHIPAMRSSLAKLLNLPITSIGITATTGEGLSGMGRGEGIGVTCLLTAQ 206 Mageeibacillus indolicus
WP_015359940   97 SV-ECLKPKISPKIPDMKKSIARLLNIDEKNIGITATTGEGLTDFGKGLGIQCFCILTal 155 Thermoclostridium stercorarium
jgi:Ccel_0344 110 SI-ECSYPKISPKIAEMRKSISELLGIPENCVGITATTGEGLTAFGQGKGVQAFCIVTAi 168
WP_003514705   98 SI-ECLTPKITPHIPAIRSSLAKLLDIPENSIGITATTGEGLTQFGQGQGIQVFSCITVe 156 Acetivibrio thermocellus
WP_014253915   98 SI-ECLIPKITPKIPEIRKSLSELLCIPENSIGITATTGEGLTSFGQGKGIQVFSCITVe 156 Acetivibrio clariflavus
WP_013043387   99 VL-ECQRPKIDPKVPALRESIAALLGIAFEDVCITATTGEKLNDVGRGLGIHATVIVTVc 157 Coraliomargarita akajimensis
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