6M5S


Conserved Protein Domain Family
DNA_pack_N

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pfam02500: DNA_pack_N 
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Probable DNA packing protein, N-terminus
This family includes proteins that are probably involved in DNA packing in herpesvirus. This domain is normally found at the N-terminus of the protein.
Statistics
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PSSM-Id: 426801
Aligned: 11 rows
Threshold Bit Score: 370.156
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6M5S_A  21 RhQTVVPGVGTLHDCCEHSPLFSAVARRL------LFNSLVPAQLKg--RDFGGDHTa----------KLEFLAPE---- 78 
F5HGB6  40 A-RMAHPFIGVVHRINSYSSVLETYCTRHh----pATPTSANPDVGt-pRPSEDNVP-----------AKPRLLES---- 98  Human herpesvirus 8 s...
Q66632  43 D-RMAHPYIGIIPRTNIYSAVLDSYCKSLn----pVYKERIPPVLGt-gR----DVPv----------TPANVTGE---- 98  Equid herpesvirus typ...
Q01020  41 E-RTAYSKIGVIPSVNLYSSTLTSFCKLYh----pLTLNQTQPQTGt-lR----LLPh----------EKPLILQD---- 96  Herpesvirus saimiri (...
O36378  44 E-RWPHPYLGLLPGVAAYSSTLEDYCHLYn----pYIDALTRCDLGqthR----RVA-----------TQPVLSDQ---- 99  Alcelaphine herpesvir...
P03219  43 D-RWAHPLVGTIHASNLYCPMLRAYCRHYgprpvfVASDESLPMFGaspALHT-PVQ-----------VQMCLLPE---- 105 Epstein-Barr virus (s...
F5HCU8  42 RyQMMHPELGLAHSCNEAFLPLMAFCGRH--------------------RDYNSPEEs----------QRELLFHEr--- 88  Human herpesvirus 5 s...
Q9E6Q2  55 RhQTVMPAIGILHNCCDSLGIYSAITTRM------LYSSIACSEFDelrRDSVPRCYpri------tnAQAFLSPM---- 118 Marek's disease herpe...
P89438  55 RhQTVVPGVGTLHDCCEHSPLFSAVARRL------LFNSLVPAQLRg--RDFGGDHTa----------KLEFLAPE---- 112 Human herpesvirus 2 s...
P09294  63 RhQAVIPGIGTLHNCCEYIPLFSATARRA------MFGAFLSST--------GYNCTpnvvlkpwrysVNANVSPE---- 124 Human herpesvirus 3 s...
Q6UDH9  87 RfQACIPPVGSLHSCCAASCMFAFAASEA------LYETLVADSLEaarLKVGAEYKnlan---dsgaSDGEMAPPrpds 157 Psittacid herpesvirus...
6M5S_A  79 ----LVRAVARLRFKECAPADVVPQRNAYYSVLNTFQALHRSEAFRQLVHFVRDFAQLLKTSFRassltettgppk---- 150
F5HGB6  99 ----LSTYLQMRCVREDAHVSTADQLVEYQAARKTHDSLHACSVYRELQAFLVNLSSFLNGCYV---------------- 158 Human herpesvirus 8 s...
Q66632  99 ----LARAARALCGDLASGDPEA--LVEFASAVQTQRTSRGCPVFRELSEFLVNLASFLNRCYS---------------- 156 Equid herpesvirus typ...
Q01020  97 ----LSNYVKLLTSQNVCHDTEA--NTEYNAAVQTQKTSMECPTYLELRQFVINLSSFLNGCYV---------------- 154 Herpesvirus saimiri (...
O36378 100 ----LCQQLKKLFSCPRNTSVKA--KLEFEAAVRTHQALDNSQVFLELKTFVLNLSAFLNKRYS---------------- 157 Alcelaphine herpesvir...
P03219 106 ----LRDTLQRLLPPPNLEDSEA--LTEFKTSVSSARAILEDPNFLEMREFVTSLASFLSGQYK---------------- 163 Epstein-Barr virus (s...
F5HCU8  89 ----LKSALDELTFRPCSEEQRASYQK-----LDALTELYRDPQFQQINNFMTDFKKWLDGGFStav------------- 146 Human herpesvirus 5 s...
Q9E6Q2 119 ----MMRVANSIIFQEYDEMECAAHRNAYYSTMNSFISMRTSDAFKQLTVFISRFSKLLIASFRdvnklddhtvk----- 189 Marek's disease herpe...
P89438 113 ----LVRAVARLRFRECAPEDAVPQRNAYYSVLNTFQALHRSEAFRQLVHFVRDFAQLLKTSFRasslaettgppk---- 184 Human herpesvirus 2 s...
P09294 125 ----LKKAVSSVQFYEYSPEEAAPHRNAYSGVMNTFRAFSLSDSFCQLSTFTQRFSYLVETSFEsieecgshgk------ 194 Human herpesvirus 3 s...
Q6UDH9 158 mlggLRGALDELAFAQYSNADAEAHERVYDGVMAGYSDMICSDEFAQLSDFVFRFAALLKTSFKgttgagrgayyvspgs 237 Psittacid herpesvirus...
6M5S_A 151 ------krakvdvathgRTYGTLELFQKMILMHATYFLAAVLLGDHA-EQVNTFLRLVFEIPLFSDAAVRHFRQRATVFL 223
F5HGB6 159 -----------------PGVHWLEPFQQQLVMHTFFFLVSIKAPQKT-HQLFGLFKQYFGLFETPNSVLQTFKQKASVFL 220 Human herpesvirus 8 s...
Q66632 157 -----------------VKSDTIEPFQKQLILHTFYFLISIKAPHAA-NTLFEVFKEYFGLFDMGREALQTFKQKSTVYL 218 Equid herpesvirus typ...
Q01020 155 -----------------KRSTHIEPFQLQLILHTFYFLISIKSPEST-NRLFDIFKEYFGLREMDPDMLQIFKQKASIFL 216 Herpesvirus saimiri (...
O36378 158 -----------------DRSSHIELFQKQLIMHTFFFLVSIKAPELC-EKFCNIFKLYFNIDTMDQATLDIFKQKASVFL 219 Alcelaphine herpesvir...
P03219 164 -----------------HKPARLEAFQKQVVLHSFYFLISIKSLEIT-DTMFDIFQSAFGLEEMTLEKLHIFKQKASVFL 225 Epstein-Barr virus (s...
F5HCU8 147 --------------egdAKAIRLEPFQKNLLIHVIFFIAVTKIPVLA-NRVLQYLIHAFQIDFLSQTSIDIFKQKATVFL 211 Human herpesvirus 5 s...
Q9E6Q2 190 ------kraridapsydKLHGTLELFQKMILMHATYFVTSVLLGDHA-ERAERLLRVAFDTPHFSDIVTRHFRQRATVFL 262 Marek's disease herpe...
P89438 185 ------krakvdvathgQTYGTLELFQKMILMHATYFLAAVLLGDHA-EQVNTFLRLVFEIPLFSDTAVRHFRQRATVFL 257 Human herpesvirus 2 s...
P09294 195 -------rakvdvpiygRYKGTLELFQKMILMHTTHFISSVLLGDHA-DRVDCFLRTVFNTPSVSDSVLEHFKQKSTVFL 266 Human herpesvirus 3 s...
Q6UDH9 238 nkrrrlnrgnssrngyrPREGRLELFQKMILMHATYFAACITLDDEStERMDRYLAEVFNTPLFSSPALHHFKQRTSVFL 317 Psittacid herpesvirus...
6M5S_A 224 VPRRHGKTWFLVPLIALSLASFRGIKIGYTAHIRKATEPVFEEIDACLRGWFGSARVDHVKGE-TISFSFPDGSRSTIVF 302
F5HGB6 221 IPRRHGKTWIVVAIISMLLASVENINIGYVAHQKHVANSVFAEIIKTLCRWFPPKNLNIKKENgTIIYTRPGGRSSSLMC 300 Human herpesvirus 8 s...
Q66632 219 IPRRHGKTWIVVAIISMLLTSVENIHVGYVAHQKHVANSVFAEIINTIYRWFPAKNVYIKKENgTIMYTNENRRPSTLMC 298 Equid herpesvirus typ...
Q01020 217 IPRRHGKTWIVVAIISMLLTSVENIHVGYVAHQKHVANSVFTEIINTLQKWFPSRYIDIKKENgTIIYKSPDKKPSTLMC 296 Herpesvirus saimiri (...
O36378 220 IPRRHGKTWIVVAIISILLASVQDLRIGYVAHQKHVANAVFTEVINTLHTFFPGKYMDVKKENgTIIFGLPNKKPSTLLC 299 Alcelaphine herpesvir...
P03219 226 IPRRHGKTWIVVAIISLILSNLSNVQIGYVAHQKHVASAVFTEIIDTLTKSFDSKRVEVNKETsTITFRHSGKISSTVMC 305 Epstein-Barr virus (s...
F5HCU8 212 VPRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKHVSQFVLKEVEFRCRHTFARDYVVENKDN-VISIDHR-GAKSTALF 289 Human herpesvirus 5 s...
Q9E6Q2 263 VPRRHGKTWFLVPLIALAMSSFEGIRIGYTSHIRKAIEPVFEDIGDRLRRWFGAHRVDHVKGE-TITFSFPSGLKSTVTF 341 Marek's disease herpe...
P89438 258 VPRRHGKTWFLVPLIALSLASFRGIKIGYTAHIRKATEPVFDEIDACLRGWFGSSRVDHVKGE-TISFSFPDGSRSTIVF 336 Human herpesvirus 2 s...
P09294 267 VPRRHGKTWFLVPLIALVMATFRGIKVGYTAHIRKATEPVFEGIKSRLEQWFGANYVDHVKGE-SITFSFTDGSYSTAVF 345 Human herpesvirus 3 s...
Q6UDH9 318 VPRRHGKTWFLVPLISLLVSCFEGLRIGYTAHLRKATKPVFEEIYARLCRWYGEDRVHQIKGE-TIAFSFKNGARSSIVF 396 Psittacid herpesvirus...
6M5S_A 303 ASSHNTN-GIR 312
F5HGB6 301 ATCFNKN-SIR 310 Human herpesvirus 8 strain GK18
Q66632 299 ATCFNKN-SIR 308 Equid herpesvirus type 2 strain 86/87
Q01020 297 ATCFNKN-SIR 306 Herpesvirus saimiri (strain 11)
O36378 300 ATCFNKN-SIR 309 Alcelaphine herpesvirus 1 strain C500
P03219 306 ATCFNKN-SIR 315 Epstein-Barr virus (strain B95-8)
F5HCU8 290 ASCYNTN-SIR 299 Human herpesvirus 5 strain Merlin
Q9E6Q2 342 ASSHNTN-SIR 351 Marek's disease herpesvirus type 1 strain MD5
P89438 337 ASSHNTN-GIR 346 Human herpesvirus 2 strain HG52
P09294 346 ASSHNTN-GIR 355 Human herpesvirus 3 strain Dumas
Q6UDH9 397 ASSQNTNvSIR 407 Psittacid herpesvirus 1 Amazon parrot/1997
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