Conserved Protein Domain Family
US2

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pfam02476: US2 
US2 family
This is a family of unique short (US) region proteins from the herpesvirus strain. The US2 family have no known function.
Statistics
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PSSM-Id: 396851
Aligned: 15 rows
Threshold Bit Score: 106.372
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q285F6     8 HLNSSLIINQXXHLWVLGAADLCKPXFDLIPGPKRMVYAEIADEF-HKSW-QPPfvcgklfETIPWTTVEhnhplklraA 85  Equine herpesvirus 1
AAC59587 111 YLNSSIIINRPYHLWVLGAADLCRPVFNLIPGPKRIVYVEIEDEF-NKSW-QPSfvcgklfETIPLTTVDykhllkqkvL 188
O41521   116 YLNSGIFGNYPLNLWVFGAADLCEPVISNIPGPKRLIYAYVSCEWpEPSW-KPEcleisknNVKHIDDSGsvyc-psfiW 193 Canid alphaherpesvi...
Q91E43   113 YLNSGLFGNYPFNLWVIGAADLCEPVISNIPGPKRLIYAYVSCVWpSPSW-KPDylniskfNVEEILDASrrvycpsyiW 191 Phocid alphaherpesv...
ABZ81708 119 HLSSGILGNHTFDMWIIGAADICKPAIEQLPNSKRFITIKVPGTWsGLTWeKPD-------GLSPLTVTE---------W 182
O89267   120 MLESDVSENTSYSLWIVGAADLCRAALEYIPLPKRLLAVKVAGTWsGMPWaLPD-------TIPTLLTST---------W 183 Gallid alphaherpesv...
Q77L60   120 MLESEASDNVSYSLWILGAADICRTAIESIPLPKRLFAIKVPGTWaGMPWaIPC-------EIQTLLTST---------W 183 Turkey herpesvirus
Q69285   120 MLESEVSGNAPHSLWIVGAADICAIALECIPLPKRLLAIKVSGTWsGMPWaIPD-------NIQTLLTST---------W 183 Gallid alphaherpesv...
Q6X203   110 LLNSGRAGARPFHVWVFGAADLYAPVFAHVAAPTRLVYAQLNCAFaGAAWrLL--------RRGPAIASS---------W 172 Bovine alphaherpesv...
O39502   105 LLNSGRARARPFHMWVFGAADLYAPIFAHIAATTRLVYAQLDCTFaGAAWrLP--------RRGPAIASP---------W 167 Bovine herpesvirus ...
Q285F6    86 GgedtvvgecGFSKHSSNS--LVHPPTVKRVIYAVVDParlreipapGRPLPRLRPSEGGMRAPRRRSRApapARSTAAA 163 Equine herpesvirus 1
AAC59587 189 PgqdhpesarSLLQHKSSF--VSPPPNFKRLIYAVVDP---------MRLQENLCPQITNRTKTKRRSKK---TYNGLFC 254
O41521   194 V---------PVLDTFLSS--FKVPPMLSDIFYGTTFNt-------pFNFESSPRCPSISSSS---SSSS-----SSSSS 247 Canid alphaherpesvi...
Q91E43   192 T---------PIRGPFLTP--IVISQSSQTIAYG----------------ESSDKPPVLTEPSKCLSTYS-----SSSSS 239 Phocid alphaherpesv...
ABZ81708 183 D---------PCDDETMSKdiIEKKLVGIKCCYDLIGQ-----------------PAAAKHNSELDDSKDv-kCCNGPAC 235
O89267   184 E---------PTFETAEDK--EHFRDNGMTCVYKIIGS-----------------PPDPPKPPRTEPSRAs-sRSDKVFC 234 Gallid alphaherpesv...
Q77L60   184 E---------PKFENIEDK--AYFNDSNMACVYQIIGS-----------------PPDVPQLQGLGIESTc-tPPKRNLC 234 Turkey herpesvirus
Q69285   184 E---------PKFDTPEDR--AHFCDSDMVCVYKILGS-----------------PPNPLKPPEIEPPQMs-sTPGRLFC 234 Gallid alphaherpesv...
Q6X203   173 P---------PYETPTLPE--LLASGILLRLVYEVVDR------------GAAPYPLRRAPWGRDTEPWG------RAPC 223 Bovine alphaherpesv...
O39502   168 P---------PYDTPTLPE--LVAGGVLFRLVYEVVDR------------GAAPRPAKREPPCPRGSPP-------RAPC 217 Bovine herpesvirus ...
Q285F6   164 ATP 166 Equine herpesvirus 1
AAC59587 255 QES 257
O41521   248 CSA 250 Canid alphaherpesvirus 1
Q91E43   240 CSS 242 Phocid alphaherpesvirus 1
ABZ81708 236 CIA 238
O89267   235 CWP 237 Gallid alphaherpesvirus 1
Q77L60   235 CCL 237 Turkey herpesvirus
Q69285   235 CGK 237 Gallid alphaherpesvirus 2
Q6X203   224 AIL 226 Bovine alphaherpesvirus 5
O39502   218 AIL 220 Bovine herpesvirus type 1.1
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