3UPS,4WCW,6SJ6


Conserved Protein Domain Family
RsfS

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pfam02410: RsfS 
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Ribosomal silencing factor during starvation
This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.
Statistics
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PSSM-Id: 426760
Aligned: 793 rows
Threshold Bit Score: 39.7345
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3UPS_A          24 KLVTDSLDDDQALEIATIPLAGkSSIADYXVIASGRSSRQVTAXAQKLADRIKAATG-----YVskieglpaA-DWVLLD 97  Zymomonas mob...
jgi:Sdel_0420  185 EKIVTALSDKKAEDIQVFDMSGkDYFVNTVIIATTMGERHGLSLLDHLKTELKGAGEsf-lnVDa-------DdNWTVID 256 Sulfurospiril...
Q0P8K9           6 DLIVKILDEKKAENIKTIDMSEqEYFVKYVIIAATLGERHALSLIDELKTRLKAKGEef-lnIDs-------SeEWSVID 77  Campylobacter...
jgi:Arnit_0420   5 ETIVKVLEDKKAVNVEVINLQDkDYIVDFVVIATTLNAKHGFALLNYLKEELKPAGEef-lrVDe-------NdDWTVID 76  Arcobacter ni...
CBG40445         7 DFIIEILGSKKAEDIECIDVREkDYIVDYVIIATSMAGRHTYALLDLLKTELKPRGEhfysvDEe-------SeDWIVVD 79  Helicobacter ...
Q7MS87         155 QEIVEILDSKKAENIELFDLSGsDYLVDYVVIATALADKHAASLLDTLKTELKPKGEtf-yaTEe-------SdNWIVTD 226 Wolinella suc...
EES89835        10 KFIIQILEDKKGENIEVFDLKNtDYFVDYVIITTAFVDKHALALLDSLKKELKQKNEtffhiDEe-------NpEWIVAD 82  Helicobacter ...
WP_013890857     7 TRIVELLEDKKALDIALFDLSHqEYITDHVIIATALAGKHALALLDHLKSTLKPLGEefyaiDEs-------NeEWLVID 79  Helicobacter ...
Q7VJ93          11 ERITTLLADKKGEDIEVFDLCDkDYIVDKVIIVSAMIGKHSFALLDYLKSELKPQGEvfyatEEe-------SeDWVVAD 83  Helicobacter ...
WP_002956987    17 QHIQTLLEDKKGEDIEIFDLSGrDYIVDKVVIVSAMIGRHSFALLDHLKTELKPQGEifyatEEe-------SdDWLIAD 89  Helicobacter ...
3UPS_A          98 AGDIIIHLFRPEVRSFYNLERX 119 Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
jgi:Sdel_0420  257 MGDMLIHLMTPQYRQKYNLETF 278 Sulfurospirillum deleyianum DSM 6946
Q0P8K9          78 LGDILIHLLTPEHRGIYNIEEL 99  Campylobacter jejuni
jgi:Arnit_0420  77 LGDAFIHLMTEKTREKYSLEEF 98  Arcobacter nitrofigilis DSM 7299
CBG40445        80 LGDIMIHLFTQNHRKKFNLEEF 101 Helicobacter mustelae 12198
Q7MS87         227 LGDIMIHLFTENHRKKFNLEEF 248 Wolinella succinogenes
EES89835        83 LGDIIVHIFTENQRKKFNLEEF 104 Helicobacter canadensis MIT 98-5491
WP_013890857    80 LGDVMVHLFTQAYRERFNLEGF 101 Helicobacter bizzozeronii
Q7VJ93          84 LGDIMIHIFTPNHRKKFNLEEF 105 Helicobacter hepaticus
WP_002956987    90 LGDIMIHIFTPNHRKRFNLEEF 111 Helicobacter cinaedi
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