3SZL,3DNF


Conserved Protein Domain Family
LYTB

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pfam02401: LYTB (This model is not part of the current CDD release)
LytB protein
The mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway for isoprenoid biosynthesis is essential in many eubacteria, plants, and the malaria parasite. The LytB gene is involved in the trunk line of the MEP pathway.
Statistics
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PSSM-Id: 514910
Aligned: 538 rows
Threshold Bit Score: 198.421
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3SZL_A        19 NPRGFCAGVDRAISIVENALAIYGAp-IYVRHEVVHNRYVVDSLRERGAIFI--EQIS---E-----VpdgaiLIFSAHG 87  Escherichia col...
B3QSU2         7 mNSGFCFGVQFAIDRVEDEMKA-SGp-LYSLGDIVHNAVEVERLEKLGLKTItiEEFKtlkNt---------rVFIRAHG 75  Chloroherpeton ...
Q8KFN9         8 tSSGFCIGVQGTIHVAEEKLAQ-SGe-LYCLGDVVHNEVEVKRLEALGMETIdiPAFEelrNa---------eVLIRAHG 76  Chlorobaculum t...
A1BDJ5         8 tSSGFCIGVQGTIHVAEEKLNN-PDk-LFSLGDVVHNEAEVNRLEHLGLTTIdeSGFHelkNa---------qLLIRAHG 76  Chlorobium phae...
B4SCU0         8 tSSGFCIGVQGTIYAAEEKLQQ-EGg-LYSFGDIVHNEVEVKRLEALGLVTVdeRAFRelrDa---------hVLIRAHG 76  Pelodictyon pha...
CDE06576      11 SQSGFCFGVVGAIRCAEKHLKE-GQp-LFCLGDIVHNADEVERLRRCGLHTIehKDLPalkGk---------rVLLRAHG 79 
B6YQB8         8 cDSGFCFGVMSAIQRAEKELIT-NDe-LYCLGDIVHNSQEVVRLQKKGLKIInhEELGriyNk---------kVLFRAHG 76  Candidatus Azob...
WP_281674070   8 pESGFCFGVIKAVSRAEEILRQEQGepLYCLGDIVHNRAQVDRLESLGMHTIdhEQFSrlsNa---------rVLYRAHG 78  Porphyromonas a...
WP_012890382 123 GTRPACPGARRALEITRDTAGGGQA--VFSYGPVTDDPHQAGALTREGVTTVtdLD-----RlpegaG-----VVFPAHG 190 Streptosporangi...
WP_015100762 127 AVKPWCTGLEASFRALDQLLSTVAGp-VHVLGTPPPCRVTTEEFIRRGTVFVesLD-----QvpdgaL-----LHFGPAG 195 Saccharothrix e...
3SZL_A        88 VSQAVRNEAKSRDlTVF--DATCPLVTKVHMEVARAS----RRGEESILIGHAGHPEVEGTMGQYsnpE-GGMYLVe--- 157 Escherichia col...
B3QSU2        76 EPPSTYKLALENNiELI--DATCPVVMKLQQRIKEFYdr----gYQVLIYGREGHPEVIGLCGQC---N-NEAIVLkh-a 144 Chloroherpeton ...
Q8KFN9        77 EPPSTYETARKNNlAIT--DTTCPVVAKLQRTAKMLHql----gYQVVIYGKKVHPEVIGINGQC---D-DEGVVIkh-p 145 Chlorobaculum t...
A1BDJ5        77 EPPSTYRIAEKNNlVIT--DTTCPVVSRLQRTARLLHel----gYQIIIYGKPSHPEVIGINGHC---K-NSAVIIkh-p 145 Chlorobium phae...
B4SCU0        77 EPPSTYRIARENNlTVT--DTTCPVVSRLQRTTRLLFel----gYQIIIYGKQSHPEVIGINGQC---N-NQAVIIkh-a 145 Pelodictyon pha...
CDE06576      80 EPPSTYQTARENNiEII--DATCPVVLQLQRRIKEAYerpsArrPLIIIYGKRGHAEVNGLVGQT---N-GEAVVVeees 153
B6YQB8        77 EPPSTYEVANQNSiHII--DATCPVVLQLQKKIQKIYqsfaNtkSQIVLFGRSKHAEVSALVGQT---N-GNAIVIeskn 150 Candidatus Azob...
WP_281674070  79 EPPSSYTYAAEHGiEVV--DATCPVVLRLQQKVRQAYlqhlKddTQIVIFGKPGHAEVNGLVGQT---D-GKAIVVrepk 152 Porphyromonas a...
WP_012890382 191 VSLALRAEAAARGlTII--DATCPLVAAAHAEVARFT----ERGDLTVVIGRSGDAAVSAVLGQ----ApESTVLV---- 256 Streptosporangi...
WP_015100762 196 ASPLVRAKAATRD--LVlsDGTCPLVAAAAGEVRRLA----EEGATVVVVADPAHAAVPTLTGQ----ApEQVVLV---- 261 Saccharothrix e...
3SZL_A       158 S------------PDDvwkltvkneekLSFMTQTTLSVDDTSDVIDALRKR-----------------------FP---- 198 Escherichia col...
B3QSU2       145 DlsdrgetekidfSRK-----------TVLFSQTTKDTTGFYELKANLENVfrehha------------aqnfdSAates 201 Chloroherpeton ...
Q8KFN9       146 DlsdpeeiapldlSRK-----------TALISQTTMDVPGFYELKRNLEKLfaehghrnpgtqsgewmavrdidITaekt 214 Chlorobaculum t...
A1BDJ5       146 DlsdpsetgqidlKRK-----------TALISQTTMDVPGFYELKANIRNLfaadseeirnendhlwmairdidLTaslt 214 Chlorobium phae...
B4SCU0       146 DlsdpdelkgldlAKK-----------SALISQTTMDVPGFYELKALLEARfaqylsseks----awmairdidITaamt 210 Pelodictyon pha...
CDE06576     154 Elda------ldlNRD-----------VELYSQTTKSLSGFQRMIHAIQERkt--------------------------- 189
B6YQB8       151 Diqq------idfAKN-----------IYLFSQTTMFVDDFKEIVKEIENKiih-------------------------- 187 Candidatus Azob...
WP_281674070 153 Dldl------idfSHA-----------VELFSQTTMQEDQLEEMLSLIKSRlsg-------------------------- 189 Porphyromonas a...
WP_012890382 257 EsaadverlrpadPEA-----------ISYLVQTGIPVEQATPVVAALRAR-----------------------FP---- 298 Streptosporangi...
WP_015100762 262 NemaqadavrvgdPGP-----------IGVVVEPGADVARLMRVAERVRAR-----------------------FD---- 303 Saccharothrix e...
3SZL_A       199 ------KIVGprKDDICYATTNRQEAVRALA-EQaEVVLVVGSKNSSNSNRLAELAQRMgKrAFLIDDAKDIQEEWV--- 268 Escherichia col...
B3QSU2       202 ---ivpDFQA--KDTICRQVSNRDQKLAAFS-KEnECVIFVAGRKSSNGKVLFEVCKDAnSnTHFIENQSELERAWFlrp 275 Chloroherpeton ...
Q8KFN9       215 galampKLVF--KDTICRQVSSRNGKLRDFA-LAnDCIVFAAGRKSSNGQVLYSICKDAnPhSYFIEDVDEIRPEWFvge 291 Chlorobaculum t...
A1BDJ5       215 girdmpRYVY--KDTICRQVSSRNQMLHDFA-IAnSCVIFVAGKKSSNGQVLFGICKAAnPcTYFIEDIDEIDDAWLtgs 291 Chlorobium phae...
B4SCU0       211 gvlsmpSLLF--KDTICRQVSSRNQKLHDFS-LAnDVVIFVAGKKSSNGQVLYHICKEAnPrSYFIEEIEEIEERWLrns 287 Pelodictyon pha...
CDE06576     190 ----sgSFKY--FDTICRQVANRMAHIREFA-RThEVIIFVCGAKSSNGKALYEACRNVnPsSYLTVNETGLQSDWF--- 259
B6YQB8       188 ----piIFSS--FNTICHQMVNRINHIRKFA-VQhNLLLFVAGDNSSNGTILFNECRRAnLnTYLISDEKDIQSEWF--- 257 Candidatus Azob...
WP_281674070 190 ----taTLIY--HNTICQQVARRIPNIRAFA-KShDRIFFVSDQKSSNGRVLYQNCLEVnPnTTFITYPSELTYDLVp-- 260 Porphyromonas a...
WP_012890382 299 ------ALRGpdPGDFCYHASDRASAVASITgAS-DLLLIAAGSHCPDARHVVRLAEPAgVpAQVVTGVADLCPDRL--- 368 Streptosporangi...
WP_015100762 304 ------HVRPqhPATLCHEPSDRHNALRLLA-EA-DVVLVVGKAAADDSEEVVARFAALgVpAFVVASAGEVEPDWL--- 372 Saccharothrix e...
3SZL_A       269 --KEVKCVGVTAGASAPDILVQNVVARL 294 Escherichia coli K-12
B3QSU2       276 ddSLVESVGVCGATSTPMWVMQQVAEHI 303 Chloroherpeton thalassium ATCC 35110
Q8KFN9       292 ngKPVESVGICGATSTPMWLLEKVANYI 319 Chlorobaculum tepidum TLS
A1BDJ5       292 dgRTVESVGICGATSTPMWLLEKVAAHL 319 Chlorobium phaeobacteroides DSM 266
B4SCU0       288 dgRAVATVGVCGATSTPMWHLEKVALHL 315 Pelodictyon phaeoclathratiforme BU-1
CDE06576     260 --KDADTVGICGATSTPSWLMNKVKDRI 285
B6YQB8       258 --NGIKSVGICGATSTPKWLMEKIAlsl 283 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
WP_281674070 261 --SHEESIGVCGATSTSREQLQEIAEII 286 Porphyromonas asaccharolytica
WP_012890382 369 --REAATVALTSARSAPAGLSEQIVTIL 394 Streptosporangium roseum
WP_015100762 373 --RTAGCVGVTASLTADPGAVDGVVDAL 398 Saccharothrix espanaensis
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