2D5V,1WH8,1WH6,1X2L,2CSF,1WIZ


Conserved Protein Domain Family
CUT

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pfam02376: CUT (This model is not part of the current CDD release)
CUT domain
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein.
Statistics
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PSSM-Id: 514897
Aligned: 36 rows
Threshold Bit Score: 83.03
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2D5V_A          2 EEINTKEVAQRITTELKRYS--------IPQAIFAQRVLCR---SQGTLSDLLRNPKPWSKLKS-GRETFRRMWKWLQEP 69   Norway rat
XP_026690218  162 KEIDTSTLAADMRAYLRSVN--------ISLDNFAKNYLLR---SQGTLSDLLNHPKPWHGLSSrGRDIYMKMIEFLSAE 230 
Q9BL02        839 TVLDTDFLVKQIKEFLTMNS--------ISQRQFGEYILGL---SQGSVSDLLARPKTWAQLTQkGREPFIRMQLFMDDV 907  Caenorhabditi...
XP_045094128 1035 EILDSQKIVSRVKEVLEEHG--------ISPRVFGDEYLNC---SPTMCADLMIRTKPFQLSRPtEKVMYFRMRNFLNDP 1103
O16218        150 IDFDLKDLCDKMFVFFSENKrhieiskpMNQTNFAEHILNR---TQGSLSELLNHPKPWDAVSM-GRTVYQRMFNWLEMS 225  Caenorhabditi...
Q9BL02        598 HPLNTTEIASHCKRLMIAYN--------IGQRLFAKHVMNQvvkSQGSLSELLSKPRHWNKLTDkGREAFRRIYGWISDD 669  Caenorhabditi...
1WH8_A         25 PELDTYSITKRVKEVLTDNN--------LGQRLFGESILGL---TQGSVSDLLSRPKPWHKLSLkGREPFVRMQLWLNDP 93   human
1WH6_A         15 REVDTLELTRQVKEKLAKNG--------ICQRIFGEKVLGL---SQGSVSDMLSRPKPWSKLTQkGREPFIRMQLWLSDQ 83   human
1X2L_A         15 EQLDTAEIAFQVKEQLLKHN--------IGQRVFGHYVLGL---SQGSVSEILARPKPWRKLTVkGKEPFIKMKQFLSDE 83   human
NP_001245565 1327 NNLNTEDIVRRVKEALSQYS--------ISQRLFGESVLGL---SQGSVSDLLARPKPWHMLTQkGREPFIRMKMFLEDE 1395 fruit fly
2D5V_A         70 EFQRMSALR 78   Norway rat
XP_026690218  231 NLNELVAVL 239 
Q9BL02        908 EASEENDEK 916  Caenorhabditis elegans
XP_045094128 1104 SSIPNLIKK 1112
O16218        226 EDDRAEIWK 234  Caenorhabditis elegans
Q9BL02        670 EAINLLCSL 678  Caenorhabditis elegans
1WH8_A         94 HNVEKLrdm 102  human
1WH6_A         84 LGQavgqqp 92   human
1X2L_A         84 QNVLALrti 92   human
NP_001245565 1396 NAVHKLVAS 1404 fruit fly
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