6OMB,5E7P,5G4G


Conserved Protein Domain Family
CDC48_N

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pfam02359: CDC48_N 
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Cell division protein 48 (CDC48), N-terminal domain
This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases pfam00004 is a substrate 185-residue recognition domain.
Statistics
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PSSM-Id: 426738
Aligned: 97 rows
Threshold Bit Score: 47.1906
Created: 19-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6OMB_E        35 MLLVDDAInD---DNSVIAINSNTMDKLELFRGDTVLVKGkKRkdTVLIVLIDDEL-E--DGACRINRVVRNNLRIRLGD 108 Saccharomyces c...
Q94392        67 MFRVRKAPsEehtLANYAYVNRSDFDDKQIKHVRVNPGPA-HH-----YIFSIRNDgSikPGEIAFGVPHRKWAALSLDQ 140 Caenorhabditis ...
XP_005156264   5 QMQAARCPtDelsLTNCVVASEKDFKS-----GQHLTIKT-TP--TQKFVFTVRTHpSvvPGTIAFSLPQRKWAGLSLNQ 76  zebrafish
Q0IJ19         5 SMQAARCPtDelsITNCAVVNEKDFQS--GQHVNVRTSPN-HR-----YIFTVKTHhTilPGSIAFSLPQRKWAGLSIGQ 76  tropical clawed...
Q9QUL6         5 TMQAARCPtDelsLSNCAVVNEKDYQS--GQHVMVRTSPN-HK-----YIFTLRTHpSvvPGCIAFSLPQRKWAGLSIGQ 76  Norway rat
EAZ63155      45 SFVVDQSPdNrivSSNCVAVNPGDFASFPNRTPFSFDAE---------FVYSIEKDeRmaPGSVGMGGNIRTWGSWSRGQ 115 Scheffersomyces...
EDK45228      50 QLVVSNAPgNdvvVANCIAVNPNDFAHVPNKTPVILDGV---------FVYSIAKDeRmkPGYIGMAANMRTWGKYSYDQ 120 Lodderomyces el...
Q4WYC1        27 TLRPAKSPdNtytFGNLVAVSTQDFPP-SRDGLDLLLLVN-DL-----YVFSARPLdGfpPGHISMSDPQRTWAGVAFTD 99  Aspergillus fum...
Q4UDM4         5 YRTVKKLPdEsltYTNCVYVNRELYENLRAESIMAYATIE-GV------VFCAKFHeLatDKDIFMNSCARELIKVSVGQ 77  Theileria annulata
XP_001610238   5 TRVVGKLPeEslsFTNCAYVNAELYNKLKTHSFMAYGTVN-TI------IFCFRHHpAcgANDILLNSCARQLIAVSIGE 77  Babesia bovis T2Bo
6OMB_E       109 LVTIHPCPdI 118 Saccharomyces cerevisiae S288C
Q94392       141 EVRVTPFTfQ 150 Caenorhabditis elegans
XP_005156264  77 DVEVSVYNfd 86  zebrafish
Q0IJ19        77 DVEVGVYTfD 86  tropical clawed frog
Q9QUL6        77 DIEVALYSfD 86  Norway rat
EAZ63155     116 SITVESYN-I 124 Scheffersomyces stipitis CBS 6054
EDK45228     121 TVHVEVYDiF 130 Lodderomyces elongisporus NRRL YB-4239
Q4WYC1       100 SVKAQIYDpF 109 Aspergillus fumigatus
Q4UDM4        78 GVTVSSESnQ 87  Theileria annulata
XP_001610238  78 SVEIKPVPdG 87  Babesia bovis T2Bo
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