7D5I,5DOQ


Conserved Protein Domain Family
Cyt_bd_oxida_II
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pfam02322: Cyt_bd_oxida_II (This model is not part of the current CDD release)
Cytochrome bd terminal oxidase subunit II
This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.
Links
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Statistics
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PSSM-Id: 514859
Aligned: 499 rows
Threshold Bit Score: 96.7614
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
7D5I_B          3 LQELWFILLAVLFLGFFLLEGFDFGVGMLMSFF----G-RaaeKRgqdpepyrRAALNTIGPVWDGNEVWLITAGGAMFA 77  Mycolicibacter...
WP_015692344    3 MYIVVLSFLLLSLLLYALLGGADFGAGVIQLLStt---pK---AE--------KVIGRAIGPIWEANHMWLVIAVVISFM 68  Saprospira gra...
WP_014680003    1 MLYINIAFLGLSILLYLLLGGADFGAGIIELFSgeeeKsK---TR--------KLTYKAIGPIWEANHMWLIITIVILFV 69  Solitalea cana...
WP_015266142    1 MLYVVIAFLYLSLLFYLLFGGADFGAGIIELFSgrslKeR---TR--------LLTYQAIGPIWEANHMWLIITIVILFV 69  Echinicola vie...
WP_013664480    1 MLYIVIAFLWTSIWLYLLLGGADFGAGIIELISkrehKsK---TR--------HTMYRVIGPIWEANHMWLIIAIVILFV 69  Olivibacter
19_pfamImport   1 MIYVVIVFLWTAILLYILLGGADFGAGIIELMTaktnKaK---TR--------KTMYKAIGPIWEANHMWLIIAIVILFV 69 
WP_013633325    1 MTYVVIAFLWASIWLYLLLGGADFGAGILELFTskkhQkN---TR--------KTVYRVIGPVWEANHMWLIIAIVILFV 69  Pseudopedobact...
WP_008584290    1 MLYIVMAYLWAAVLLYVLMGGADFGAGILEFFStqksKdK---TR--------TVMYRAIGPIWEANHMWLIIAIVVLFV 69  Niabella soli
WP_015815076    1 MLYIVITYLWASILLYLLLGGADFGAGIIELFTsqknKqV---TR--------KTLYSAIGPIWEANHMWLIIAIVILFV 69  Dyadobacter fe...
WP_008199835    1 MIYVVIIFLGLSILLYVLLGGADFGAGIVEITTqskmRdR---IR--------ATTYKTIGPVWEANHMWLIITIVILFV 69  Algoriphagus m...

7D5I_B         78 AFPEMYASMFSGLYLALLVILCAMILRIVAIEWRGKI-D-DPGWRRWADTGIAVGSWVPAILWGVAFASLVRGLPvDadk 155 Mycolicibacter...
WP_015692344   69 GFPAIFKVVSTALHIPVFILLLGIIFRGTAYAFKHYDaIkDEKSQLMYHRVFVWGSLVSTLFIGITFGAMSLGKIdP--- 145 Saprospira gra...
WP_014680003   70 AFPMIYSTISVHLHIPLLIMLFGIIARGTAFVFRHYDaVkDD-MQKVYNVIFVYSSFITPLFLGVISGSLIAGRIdL--- 145 Solitalea cana...
WP_015266142   70 GFPEIYTLASVYLHIPLSLLLIGIIARGTAFIFRHYDaVkDH-FQKVYNLIFVYSSFMTPFFLGILAGTAISGRInP--- 145 Echinicola vie...
WP_013664480   70 GFPKIYTTMSIFVHIPLTAMLLGIIARGTAFVFRNYDaVeDR-MQSIYNRIFVYSSAITPFFLGIIAASTVSRKIdV--- 145 Olivibacter
19_pfamImport  70 GFPKIYTTISVYLHIPLVCMLLGIIARGTAFVFRNYDaVkDD-MQKIYTPIFVYSSLITPFFLGIIAASSVSGQIdP--- 145
WP_013633325   70 GFPDIYTTMSIHMHIPLVLMLFGIIARGTAFAFRHYDaVvDD-MQTLYNKIFQYSSFITPFFLGIIAASTVSGSIdT--- 145 Pseudopedobact...
WP_008584290   70 GFPVIYSTLSVYLHIPLAIMLLGIVARGTAFSFRNYDaVkDR-MQGIYSKTFMYSSVITPLFLGIIAGSAVSGKInL--- 145 Niabella soli
WP_015815076   70 GFPVIYSTMSVNLHIPLTVMLIGIIARGTAFTFRHYDaVvDD-MQHLYNTIFAVSSFITPLFLGIIAGSAVSGHIdP--- 145 Dyadobacter fe...
WP_008199835   70 GFPKVYTMLSIHLHIPLVLMLIGIIGRGTAFVFRHYDaVkDD-MQRVYNLIFTYSSFVTPFFLGLIFGAAVSGRVnP--- 145 Algoriphagus m...

7D5I_B        156 qihlSff-------gdLLNAYTLLGGLATCALFAFHGAVFVSLKtsGE-IRTDAFGFARLLA-LPATALVAAFGVWtqva 226 Mycolicibacter...
WP_015692344  146 ----NaadfytgyiapWFNFFSISVGFLTTALFAFLAAVYLIGEneDPeVKDFFIAKAWKWLlASVAIGIVVFVAAyvdg 221 Saprospira gra...
WP_014680003  146 ----NatdfhtafiapWFNLFSFSVGLFTVCICGFLAAVYLIGEakSTeDVQIFTRKAKRMNiVTVLAGALVFIIAeieh 221 Solitalea cana...
WP_015266142  146 ----EatdfvsaylspWLGWFPLSVGVFTVVICGFLAAVYLIGEanNNeDRDLFRQKAFRMNiLTVITGGLVFLVGeweg 221 Echinicola vie...
WP_013664480  146 ----GatnflsayvdsWLNSFGIAVGLFTVCICGFLAAIYIIGEvhSSdDRQHFIRVAKKMIvAAFVAGGLVFIAAhyeq 221 Olivibacter
19_pfamImport 146 ----SannflsayifsWLNWFSVAVGIFTVSICGFLATIFIIGQtdNDgDREHFVGKARRTIfIVMFCGALVFIAAyseg 221
WP_013633325  146 ----EstdflnayifsWFNWFGIAVGFFTVAICGFLAAIFIIGEtdTEeDKKRFIKKAKYMNiGAVISGSLVFIIAyleq 221 Pseudopedobact...
WP_008584290  146 ----QatsfveayifsWLGFFQVAVGVFTVTICGFLAAIFIIGEtkTEaDRLRFITKAKHMSiAALTAAALVLLAAfkdg 221 Niabella soli
WP_015815076  146 ----SarsfadayifsWLHWFAITVGLFTVSICGFLASVYLIGEtkVEhERLRFAHKAQFFNiAAVVCGALVFVAAwfeh 221 Dyadobacter fe...
WP_008199835  146 ----TavdyyqsfiypWFNFFSVSVGIFTVMICGFLAAVYLVGEteENeVKSLFLKKARLFLvLMVLAGGLVFLAAevde 221 Algoriphagus m...

7D5I_B        227 hg----tgwtwI--VLAAAVIAQLVAvaqv-frgSGegW--AFGATSVVVAAVVVLLFGSLFPDLIPStlnpdwS----L 293 Mycolicibacter...
WP_015692344  222 lplfnelisspLsmLAIGFAAGSLPLmfst-irkGK--VvlARLMAGAQTVLILGAWLLLHYPHAIML------SnggsL 292 Saprospira gra...
WP_014680003  222 inlmrglfsngLslIAISLASFSLIFlwyf-llkGR--KiiVRLLAGFQITMILFAVGYEYFPAFVML------KdggqI 292 Solitalea cana...
WP_015266142  222 iplftelinhpVglAALVLATLSLPVtwll-lkkKK--VywPRVLVGFQITMILITLMASQHPDFIVL------Qns-tI 291 Echinicola vie...
WP_013664480  222 iplldwifghwIgsLAIGAASISLIFlwis-lskNR--AilIRLLAGFQVSMILLAATYIHFPKIILL------KggasL 292 Olivibacter
19_pfamImport 222 iplaswifgdtPglIAIIAASISLLVmfya-lkkDK--PilLRLLAGFQVTMILFAATYTHFPDIVLL------KngenL 292
WP_013633325  222 iplidwifgnvVgiVAITAATVSLIIlwrt-ieqKR--TvlLRILAGFQVTMILLAITWEHFPNIIML------KngnyL 292 Pseudopedobact...
WP_008584290  222 vplthwlfgnpVsfTCVLLAVVSLAWmwvslfrqST--Kw-LRIIAGAQITLLLVAITYEHYPVLINL------KdsegL 292 Niabella soli
WP_015815076  222 iplidwvfgnwIgrIAILSATLSLIWmwtl-lyqGK--IrlLRPLAGFQVTMILLTTTFRHFPNIVVL------KgggyL 292 Dyadobacter fe...
WP_008199835  222 lglahllllepItmGILFLATIALVVlwlqlgkgKR--Kv-SRFLSGFVVTAILLAFGYHYFPNIILT------EsgenL 292 Algoriphagus m...

7D5I_B        294 TIYNGSSSPYTLKIMTWAALVFAPLVVVYQGWTYWVF 330 Mycolicibacterium smegmatis MC2 155
WP_015692344  293 DLYDSRAPDATLAVLGWALLLGSLFILPALGYLYVVF 329 Saprospira grandis
WP_014680003  293 SLIENTAPLNTQLALGYALLFGCVFILPALFYLYYSF 329 Solitalea canadensis
WP_015266142  292 SLENAAAGESTIFALGMALLIGSLFILPALFYLIYSF 328 Echinicola vietnamensis
WP_013664480  293 SLVEDAGLNKTIEALAWALLLGSIFILPALFYLIYSF 329 Olivibacter
19_pfamImport 293 SLLTHQGQARTIASLGYALLIGSIFILPALVYLIYIF 329
WP_013633325  293 SLIENAGHEKAIASLAYALLIGSLFILPALYYLIYSF 329 Pseudopedobacter saltans
WP_008584290  293 SLLIHHGSDKSIRALAIALLAGSVFILPALFYLLYSF 329 Niabella soli
WP_015815076  293 SLTEHAGHEKTVEALGWALLLGSILILPALFYLIYSF 329 Dyadobacter fermentans
WP_008199835  293 SVFNSAALGKPIDSLAWALLIGSLLILPSLFYLLFSF 329 Algoriphagus machipongonensis
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