Conserved Protein Domain Family
AUX_IAA

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pfam02309: AUX_IAA 
AUX/IAA family
Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.
Statistics
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PSSM-Id: 426712
Aligned: 98 rows
Threshold Bit Score: 205.555
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EFJ32574       19 ETELRLGPPkskepaknnvaageapkwqhekveqpkseksnepdlsggnvfwqaaarmipqevqapspaahqemshtayc 98  Selaginella mo...
XP_006654667   46 ELELKLGLP----------------------------------------------------------------------- 54  malo sina
XP_004969905   46 klELKLSLP----------------------------------------------------------------------- 54  foxtail millet
Q8LQ74         48 kLDLKLGLP----------------------------------------------------------------------- 56  Japanese rice
KQK09658       47 klELKLGLP----------------------------------------------------------------------- 55  stiff brome
10_pfamImport   1 KLELKLGLP----------------------------------------------------------------------- 9  
CDM83996       48 KLELKLGLP----------------------------------------------------------------------- 56  bread wheat
XP_004954379   40 ddELELGLC----------------------------------------------------------------------- 48  foxtail millet
XP_006648119   33 eeELELGLS----------------------------------------------------------------------- 41  malo sina
XP_006355888   47 eTELELGL------------------------------------------------------------------------ 54  potato
EFJ32574       99 nvastaamaanknkrvfseaigsngqfvegrsvmpnppgivvagspsnpGtgnggasssnpgvpVAPAPSQpsngkasat 178 Selaginella mo...
XP_006654667   55 -------------------------------------------------Glhegeq--aagsreKIQQQ-Qqdgssap-- 80  malo sina
XP_004969905   55 -------------------------------------------------Glveeeta-tvsrheGIQRErpals------ 78  foxtail millet
Q8LQ74         57 -------------------------------------------------Gfieddea-etlrdyRLQQEspsls------ 80  Japanese rice
KQK09658       56 -------------------------------------------------Glaeeetp-atsrenMIHQErpals------ 79  stiff brome
10_pfamImport  10 -------------------------------------------------GlvkeepaassrdnrVVHQEspals------ 34 
CDM83996       57 -------------------------------------------------GlveeepaassrennRVHQEspals------ 81  bread wheat
XP_004954379   49 ----------------------------------------------------------------LGSKKQQqqqtpspap 64  foxtail millet
XP_006648119   42 ----------------------------------------------------------------LGSKKQQqqqhap--- 54  malo sina
XP_006355888   55 -------------------------------------------------GlslgasaaagdvipKSKTGSRgcyakiltp 85  potato
EFJ32574      179 applmpSSMYpwnsskqlpaawrmgleqskssfgpfpsssrmapkmgdvdnnnsnsgspnssGLTSHNKEdateea---- 254 Selaginella mo...
XP_006654667   81 spscfpAHSKaias---------------------------------------------ittTGAKRGSLasvgatpegy 115 malo sina
XP_004969905   79 -lccfhEPSKpttn---------------------------------------------tttTGTKRVFLdtievktegc 112 foxtail millet
Q8LQ74         81 -lsffpKHSKttss--------------------------------------------ttttTGAKRGFIdtvedktegy 115 Japanese rice
KQK09658       80 -lgylpLHSMttas---------------------------------------------tttTGAKRGFLdtveakaegy 113 stiff brome
10_pfamImport  35 -lgyhpHKHStanp---------------------------------------------tttTGAKRGFLdtveakaqgh 68 
CDM83996       82 -lgyppRHSTtit----------------------------------------------tttTGAKRGFLdtveakaqgy 114 bread wheat
XP_004954379   65 criltaRDLQpgalspdssvs--------------------------------ssspaagaaaaSKRAKAdaapnattsp 112 foxtail millet
XP_006648119   55 criltaRDLQpaaaalspdss---------------------------------vsssspatgaSKRATAeegpgaatts 101 malo sina
XP_006355888   86 kkdfssLGSNsssscssssa-----------------------------------ikannascgTKRTADsispp----- 125 potato
EFJ32574      255 ------------------------------------------------------------vpsaspPVVGWPPVQSFRKN 274 Selaginella mo...
XP_006654667  116 nqihrdreecgneltlggenma-------------gerkkgcspsppshgsaavhssnpqgrgaipPVVGWPPIRSFRRN 182 malo sina
XP_004969905  113 deqkqqaragcgnelaleqkivvv---------serkkgccpppshappaasvrnrpkaqgrgasaPVVGWPPIGSFRKN 183 foxtail millet
Q8LQ74        116 ndqkqqaragcgkelaveemiaavs-------erkkgccpppppphgapatparnrpqtqgrgaaaPVVGWPPIRSFRRN 188 Japanese rice
KQK09658      114 neqkqqaraacgkeltveentaaase-----rkkgccppppshappatparnngnrppargrgaavPVVGWPPIRSFRRN 188 stiff brome
10_pfamImport  69 ekeqkqqaraaacgkelaaeentaaaavgerkkgccppppshappaaaparnignrpqargrgaavPVVGWPPIRSFRRN 148
CDM83996      115 ekeqkqqaraaacgkelaveentatvg--erkkgccpppppphappatparnignrpqargrgaaaPVVGWPPIRSFRRN 192 bread wheat
XP_004954379  113 g------------------------------------------------------tvasghpqssfGVVGWPPIRTFRMN 138 foxtail millet
XP_006648119  102 pg-----------------------------------------------------tvasghphssfGVVGWPPIRQFRMN 128 malo sina
XP_006355888  126 -------------------------------------------------------------rssvsQVVGWPPIRTYRMN 144 potato
EFJ32574      275 LV-AHPPPPQhKStetttkngvssntsapaPAPAAANAat--------asPLFVKVYMDGVPIGRKVDLKANNSYDKLST 345 Selaginella mo...
XP_006654667  183 LTtNGSSSKQsPE-----------------QQ---NDEaddkak-lickkRPLVKINMDGIPIGRKVDLALYDSYQKLSS 241 malo sina
XP_004969905  184 La-NGSSSKQsTG-----------------SQ---KGEasmeek-ltcikNHLVKINMDGIPIGRKVNLAAYDSYERLSL 241 foxtail millet
Q8LQ74        189 La-SSSSSKHsPE-----------------PQ---NDNanakvt-ltckkNPLVKINMDGIPIGRKIDLAAYNSYDGLSS 246 Japanese rice
KQK09658      189 La-TSTSSKQpPE-----------------QQ---NGEadakvk-lncnkSPLVKINMDGIPIGRKVDLAGCDSYERLSL 246 stiff brome
10_pfamImport 149 La-STSASKQvHE-----------------PQ---IAEadakaa-lnckkSPLVKINMDGIPIGRKVDLAACDSYERLSL 206
CDM83996      193 La-STSASKQpPE-----------------PQ---IGEanakav-ldckkSPLVKINMDGIPIGRKVDLAACDSYERLSL 250 bread wheat
XP_004954379  139 NL-FNQAKENaSEagtkkaad-esgmqkdkESekk------------grvVGWVKVNMDGDIIGRKVDLNAHRSYKTLAS 204 foxtail millet
XP_006648119  129 SL-FNQPKENtSEadtkktntnesdvqkdkEEcekk-----------vrvAGWVKVNMDGEVIGRKVDLNAHRSYKTLAL 196 malo sina
XP_006355888  145 TL-VNQTKPPpPEefsvtnek--ckskntitNAGSSKInnfakekglvkaSLFVKVNLDGVTIGRKVDLNAHSSYENLAR 221 potato
EFJ32574      346 VLEDMFLRFITGQ----NGTPEVSSIRdPGEKkLNFLQSS-DFVLTYEDKDGDLMLVGDVPWGMFTGTVKRLRIMKGSEA 420 Selaginella mo...
XP_006654667  242 AVEELFRGFLEaqkdlsCAE-SGEQGT-EEKIfSGLLDGTgEYTLVYEDNDGDRMLAGDIPWNVFVSTAKRLRVMRRSEL 319 malo sina
XP_004969905  242 AVKELFQGFLAaqknlsSAE-NAQLGA-DEKIfSQLLNGSgEYTLVYEDNEGDKMLVGDVPWNVFVSTAKRLRVLRSSEL 319 foxtail millet
Q8LQ74        247 AVKQLFHGFLQaqkdqtNAQ-IAQQGA-DDKIfYQLLDGSgEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSEL 324 Japanese rice
KQK09658      247 AVKELFHGFLEaqrepsSAE-SAQQGA-DRKIfSQLLDGSgEYTLVYEDNEGDRMLVGDVPWNVFVSTAKRLRVLRSSEL 324 stiff brome
10_pfamImport 207 AVKDLFHGFLEvqrdtpRAE-RAQQGA-DEKIfSQLLDGSgEYTLVYEDNEGDRMLVGDVPWNVFVSTAKRLRVLRSSEL 284
CDM83996      251 AVKDLFHGFLQvqrdpsKVE-RTQQGA-DENIfSRLLDGSgEYTLVYEDSEGDRMLVGDVPWNVFVSTAKRLRVLRSSEL 328 bread wheat
XP_004954379  205 ALELMFMKPSIGLct------------sSSAKsLNLLDSSsEYQLTYEDRDGDWMLVGDVPWEMFVGSVKRLKIMRTSDA 272 foxtail millet
XP_006648119  197 ALELMFTKPSIGLct------------sHNTKsLKLLDNSaEYQLTYEDRDGDWMLVGDVPWEMFVGSVKRLRIMRTSDA 264 malo sina
XP_006355888  222 TLDNMFLRPSTTVcarsSNAQELGVMS-ETAFsSRLLDGSsEFVLTYEDKEGDWMLVGDVPWEMFISSVKRLRIMRTSDA 300 potato
EFJ32574      421 IGLAPR 426 Selaginella moellendorffii
XP_006654667  320 phdmqk 325 malo sina
XP_004969905  320 SHGLig 325 foxtail millet
Q8LQ74        325 shtlig 330 Japanese rice
KQK09658      325 Sralig 330 stiff brome
10_pfamImport     ------    
CDM83996      329 shglig 334 bread wheat
XP_004954379  273 Nnglgp 278 foxtail millet
XP_006648119  265 NGLGQR 270 malo sina
XP_006355888  301 NGLGTs 306 potato
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