1BBY


Conserved Protein Domain Family
TFIIF_beta
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pfam02270: TFIIF_beta 
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Transcription initiation factor IIF, beta subunit
Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIF (TFIIF) is a tetramer of two beta subunits associate with two alpha subunits which interacts directly with RNA polymerase II. The beta subunit of TFIIF is required for recruitment of RNA polymerase II onto the promoter.
Links
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Statistics
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PSSM-Id: 426691
Aligned: 24 rows
Threshold Bit Score: 90.7532
Created: 19-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1BBY_A         2 ARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWelkpeyR 66  human
XP_007777181 242 VRIGETELINMIFDAFKEFQYWSLKALRDRTKQPESYLKETLDQIAVMVRGGAFTNLWmlkpenR 306 Coniosporium apollinis CBS 100218
CCG84728     259 ARMSLDNLLDEIVKCFKQYEYWSLKAFKAHLKQPESYLKETLENIAMLHKRGPMTGKWqlkaetR 323 Taphrina deformans PYCC 5710
EGU80812     274 ARIPENQLLDLIFECFRQYQYWSVKALRQKLQQPEQYLRQVLEKIAVLNKSGRFANQYclsdayR 338 Fusarium oxysporum Fo5176
EPE06285     289 ARMPENVLLDLIFACFGRFRFWSMRALRAEIPQPEIYMRQTLEKVADLHRSGRFANNWelksenR 353 Ophiostoma piceae UAMH 11346
EEQ84678     270 ARMPQNELLDLIYGCFRRHKYWPFKSLKAELRQPEAYLKQTLEMVAHLVKSGDFAMTWelkpeaR 334 Blastomyces dermatitidis ER-3
Q5K8M0       230 ARLERHELTDRIFQCFRDHPYWALGALKQTLEQPDAWLREVLRDVAEQVKEGQYQGYWqlkpvwR 294 Cryptococcus neoformans
XP_001879688 251 ARMPRNQLLDQIFSLFRETPHWGIRPLREKTQQPEAYLKEVLSEVAFLHRSGEHSGFFelkenyK 315 Laccaria bicolor S238N-H82
XP_015219269 188 ARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRGIGIYNVKGTHKNTWelkpeyR 252 spotted gar
EFO26064     220 VRADKDVVRQAIFHAFEKHQYYRLVDLQKLTSQPPGFVKEILTEIAVYNTMPPHKSMWelkpeyR 284 eye worm
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