Conserved Protein Domain Family
DUF123

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pfam01986: DUF123 
Domain of unknown function DUF123
This archaebacterial domain has no known function. It is attached to an endonuclease domain in Methanocaldococcus jannaschii endonuclease III (nth). The domain contains several conserved cysteines and histidines. This suggests that the domain may be a zinc binding nucleic acid interaction domain (Bateman A unpubl.).
Statistics
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PSSM-Id: 426548
Aligned: 67 rows
Threshold Bit Score: 85.7471
Created: 19-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012473818     38 IPLEPGFYLYIGSALNKKpsSmpLARRLVRHasRSNGkpaheareymirffqkhqlatadlhppanKKLHWHIDYLLDCP 117 Chlorobium p...
jgi:RoseRS_1232  28 LDFPAGYYLYIGSAFGSG--G--LPARLAYHakRRKT------------------------------RRHWHIDYLREHG 73  Roseiflexus ...
WP_015280430     36 LELAAGGYLYVGSALGPG--G--VAARCRHH--ERIA-----------------------------ARPHWHLDYLR--P 78  Thioflavicoc...
WP_012969346     28 lTLAGGELLYVGSALGPG--G--LAARCRHH--GRLA-----------------------------ARPHWHLDYLR--P 70  Allochromati...
WP_012256524     44 FDFAPGHYYYVGSAFGTG--G--LAARLRRH--IAIE-----------------------------KRFHWHIDYLR--P 86  Chloroflexus...
WP_012500510     40 ISVPKGDYLYIGSALGEAk-RfaLARRLFRHacRSNGkkphailaplltdfkqiglgtekqlpakeKKLFWNIDFLLDEM 118 Chloroherpet...
Q3ARA2           42 FSLSAGMYLYVGSALGNRs-GypLARRLIRHasRSGNnpphamrqtllhy---fsttcnttftpspKKLRWHVDYLLEQP 117 Chlorobium c...
WP_012509244     41 FTLPEGDYLYIGSALGNNqnGspLARRLIRHasRSGGkaphaiqaamiklfseghftgngaieatdKKLRWHIDYLLDHK 120 Pelodictyon ...
Q8KFW9           43 LELQPSHYLYVGSALGSAkgRfpLASRLLRHasRSDSkpphairsallelf--mswgyrapasrgdKKLHWHIDFLLDRE 120 Chlorobaculu...
WP_013458098     38 FRLAPGRVYYVGSALAGR-----LPSRLLRHatRAGGpphrmrgellayf----qalgwavrpparKTLHWHADHLMESP 108 Oceanithermu...
WP_012473818    118 YARITTAFVirSPLRLETAVSDLAasldeTC---IIArKLGARDTRSGTHLLG 167 Chlorobium phaeobacteroides
jgi:RoseRS_1232  74 ELEEAWIIA--CPVRLEHAWVSALsaapdVQ---PVApGFGASDSPCTSHLFF 121 Roseiflexus sp. RS-1
WP_015280430     79 HCRILGFWIahGRTRREHAWARALga--lPQahwPLA-RFGASDCDCPAHLIW 128 Thioflavicoccus mobilis
WP_012969346     71 HCRVAGCWVarGLERREHVWARALgt--lPGaswPLA-RFGASDCDCPAHLIR 120 Allochromatium vinosum
WP_012256524     87 HAEIRTIWAapGRDRLECRWCKELak--vPElirPIS-GFGASDTGCGGHLFF 136 Chloroflexus aurantiacus
WP_012500510    119 AVEINSVYAirSEVRYESILAERFqadsrTW---ILEkGLGANDSPKHTHVLg 168 Chloroherpeton thalassium
Q3ARA2          118 EATLSEVVIiqSPLRLEYALATLLeamqeTS---HIApHLGAQDCRDSTHLLR 167 Chlorobium chlorochromatii CaD3
WP_012509244    121 EAEIDHVVIirNPLRVEERLAEFLeslpeTA---LIApRLGAQDTRNSSHLLR 170 Pelodictyon phaeoclathratiforme
Q8KFW9          121 EAELAHVFIfpGAERIEARLAATLaampeTT---PVAdRLGAQDAAAGTHLFR 170 Chlorobaculum tepidum
WP_013458098    109 -AELAAVYLfyGGTRREAFLEDALra-lgAE---PLApGLGAGDRPGGSHVLw 156 Oceanithermus profundus
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