Conserved Protein Domain Family
DUF123

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pfam01986: DUF123 (485456 is an unknown moldel)
Domain of unknown function DUF123
This archaebacterial domain has no known function. It is attached to an endonuclease domain in Methanocaldococcus jannaschii endonuclease III (nth). The domain contains several conserved cysteines and histidines. This suggests that the domain may be a zinc binding nucleic acid interaction domain (Bateman A unpubl.).
Statistics
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PSSM-Id: 485456
Aligned: 57 rows
Threshold Bit Score: 83.4444
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012509244  41 FTLPEGDYLYIGSALGNNqnGspLaRRLIRHASRSGGKaphaiqaamiklfseghftgngaieatDKKLRWHIDYLLDHK 120 Pelodictyon pha...
1_pfamImport   1 FDFAPGHYYYVGSAFGTG--G--LaARLRRH--IAIE-----------------------------KRFHWHIDYLR--P 43 
WP_012500510  40 ISVPKGDYLYIGSALGEAk-RfaLaRRLFRHACRSNGKkphailaplltdfkqiglgtekqlpakEKKLFWNIDFLLDEM 118 Chloroherpeton ...
Q8KFW9        43 LELQPSHYLYVGSALGSAkgRfpLaSRLLRHASRSDSKpphairsallelf--mswgyrapasrgDKKLHWHIDFLLDRE 120 Chlorobaculum t...
WP_013458098  38 FRLAPGRVYYVGSALAGR-----LpSRLLRHATRAGGpphrmrgellay----fqalgwavrppaRKTLHWHADHLMESP 108 Oceanithermus p...
WP_015280430  36 LELAAGGYLYVGSALGPG--G--VaARCRHH--ERIA-----------------------------ARPHWHLDYLR--P 78  Thioflavicoccus...
WP_012969346  28 lTLAGGELLYVGSALGPG--G--LaARCRHH--GRLA-----------------------------ARPHWHLDYLR--P 70  Allochromatium ...
Q2RZZ3        28 MTVRPGVYVYVGSAFGPG--G--LrARVGRH--ARGD-----------------------------GALHWHVDYLR--A 70  Salinibacter ru...
Q8TXR4        28 viVEAGSWTYVGSGMGQGssG--LrGRLGRHLKSAREG---------------------------TERPHWHIDHLLSQV 78  Methanopyrus ka...
3_pfamImport   1 VTLRAGIYLYLGSAKGPG--G--LrARVSRH--LRRE-----------------------------KRVHWHIDRLLAAP 45 
WP_012509244 121 EAEIDHVVIirNPLRVEERLAEFLeslpeTA---LIApRLGAQDTR--NSSHLLR 170 Pelodictyon phaeoclathratiforme
1_pfamImport  44 HAEIRTIWAapGRDRLECRWCKELak--vPElirPIS-GFGASDTG--CGGHLFF 93 
WP_012500510 119 AVEINSVYAirSEVRYESILAERFqadsrTW---ILEkGLGANDSP--KHTHVLg 168 Chloroherpeton thalassium
Q8KFW9       121 EAELAHVFIfpGAERIEARLAATLaampeTT---PVAdRLGAQDAA--AGTHLFR 170 Chlorobaculum tepidum
WP_013458098 109 -AELAAVYLfyGGTRREAFLEDALra-lgAE---PLApGLGAGDRP--GGSHVLw 156 Oceanithermus profundus
WP_015280430  79 HCRILGFWIahGRTRREHAWARALga--lPQahwPLA-RFGASDCD--CPAHLIW 128 Thioflavicoccus mobilis
WP_012969346  71 HCRVAGCWVarGLERREHVWARALgt--lPGaswPLA-RFGASDCD--CPAHLIR 120 Allochromatium vinosum
Q2RZZ3        71 ATALEAVWYthDPERRECTWAAVLrs--lSGasvPVD-GFGASDCT--CPAHLVR 120 Salinibacter ruber DSM 13855
Q8TXR4        79 RPEVEGAWI--MEGDRECELAAAL-----ADmvpGIR-GFGCSDCH--CETHLFR 123 Methanopyrus kandleri
3_pfamImport  46 GASVAYVVYge-thLPECVLTRPLe---eLGcrhPLP-GFGSSDCKhgCTSHLLE 95 
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