4IWS,5O3M


Conserved Protein Domain Family
UbiD

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pfam01977: UbiD 
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3-octaprenyl-4-hydroxybenzoate carboxy-lyase
This family has been characterized as 3-octaprenyl-4- hydroxybenzoate carboxy-lyase enzymes. This enzyme catalyzes the third reaction in ubiquinone biosynthesis. For optimal activity the carboxy-lase was shown to require Mn2+.
Statistics
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PSSM-Id: 426542
Aligned: 397 rows
Threshold Bit Score: 117.211
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4IWS_A            34 VDHLRRQGDLVDVHTEVDANLEIGAITRRV--YerRAPAPLFHNIrdslpgaRVLGAPAG-------LRAdrarahsRLA 104 Pseudomonas...
WP_013110408      28 slgraAEAELIRITVAVDPREELFEIVHQIdqLteFPPVVVFDDVrgs--qfPVVVNLLA-------TEQ-------RCA 91  Planctopiru...
WP_011323419       8 LQRLEQDGDALAVESDLHTVDEVAMVGYES--LkhNGPAITYENTag---vvRLASGAYAgpdqlqpHEQkp---wtRIA 79  Natronomona...
KHU:HacjB3_15561   8 lRILDANEDLLTVAEHVHWDEETAAVAVEA--LkhDCKGLQFTSTsg---evDLASGIYAghaqissRTHqp---wrRLK 79  Halalkalico...
WP_012945234       8 LDRLRETGDLISVTERVHWEGAVAEVASEA--TrhNCPVTLFENTsg---tvRPVSGVYGgadqfasADQrp---wqRIS 79  Haloterrige...
WP_015320042       8 LERLRETDDLVPVAERVHWDATAASVAAEA--TrhNCPATLFEDTpg---evRLASGVFGgpdqftsLDRhp---wqRTA 79  Natronococc...
WP_049954238       7 LDRLEQTNDLVTITEGVHWDETAATVAREA--IrgGAPAALFETTpg---rvRFASGVYGgpsqfssRSHqs---gqRIA 78  Halostagnic...
jgi:Snov_1276     11 vRAMDDAGFLVRITDEIRV-DQIPVTLEANpt-----kAVLIEKIkdc--efSVLANAYS-------NQD-------MYA 68  Starkeya no...
jgi:Mnod_8148     19 VAAMEKAGLLVRIPGEKRV-DELPMLMEQHyd-----kAIFVERIqdc--efSFLANAYS-------NHA-------QYA 76  Methylobact...
jgi:Gura_2520     16 ICLLKREEDLVEIDVPVDEVHAIGPITRSG--FkrNLPALHFLNLlhs--eaSLLVNAFA-------TRR-------RLA 77  Geobacter u...
4IWS_A           105 LHFGlp---ehSGP----RDIVAMLRAAMR-Ae----pIAPRRL--ER---GPVQeNVwl----gEQVD-----LTRFPV 158 Pseudomonas...
WP_013110408      92 QMLGvpywndiSQLfpfsRATNSETKGFLW-StatepiIRQRTVasQQvir------------lgGEVD-----LGTLPG 153 Planctopiru...
WP_011323419      80 LAVGldtg-------tsyAELLEYTTGLRE--------TTP-----------VAEnGTepldarpAGID-----LGDLGL 128 Natronomona...
KHU:HacjB3_15561  80 KALDreg--------ddyVQLLEAVSRRNT--------RAPd--------dIILEePAatiksssNPAS-----LG-LPT 129 Halalkalico...
WP_012945234      80 QALDlgpe-------csyTELIEHLARWET-----------------SdidDVTDeSAatvrdsgDIYS-----LG-LPT 129 Haloterrige...
WP_015320042      80 QALGfdpd-------csyETVVERLASRTT---------------------APTEgSPdgepdatPLENvdlygLG-LPT 130 Natronococc...
WP_049954238      79 QALGlgpd-------csyVELLERLAGRET----------------ASvedRQTEpAAtdideagDLHT-----LG-LPT 129 Halostagnic...
jgi:Snov_1276     69 WAME-------CDK----TQTGRKMVETAK-Sr-------vKWEvvDT---APCK-EVil---kgDEVD-----LTRLPL 117 Starkeya no...
jgi:Mnod_8148     77 WALG-------CSR----SEIGNVTAELAK-Gr-------iKPKivAT---APCK-EVil---kgADVD-----LSRLPL 125 Methylobact...
jgi:Gura_2520     78 LLLG-------TEE----SQLVQEYIKRTDrNr----wCPPKVAe-----kAPCKeKKqf----heAVD-----IRRFPQ 128 Geobacter u...
4IWS_A           159 PLLHEQDGGRYF-GTyGF-HVVQTPDGSWDSWSVGRLMLVDRNTlAGPTIPTQHIGII-REQWRRLGkPTPWAMALGAPP 235 Pseudomonas...
WP_013110408     154 IYRQSQ--SPHP-SLfHAhSVTRGTG-GDRSVDRCHLSIL-DSKtLICDWPLGSASLRhLEEARVAGqPLPVAFVMGSDT 228 Planctopiru...
WP_011323419     129 PVPPTCEGG--MaTL-GIfAVGGD---RT-TWSPVRGRVR-GPNrLRVSIPER------LGEELGTR--ARVTVSLGVPC 192 Natronomona...
KHU:HacjB3_15561 130 VEP---NGRQQI-TL-GLiAVEHE---GMTSWAPVRGAIH-RRSqLRLSVPQP------FIEWCGDN--RQASISLGIAA 192 Halalkalico...
WP_012945234     130 TS----DGTPLV-SL-GLlVVERD---GVTTWAPIRGRAQ-RSQtLRLSVPES------VVEWCTSS--ADVSVVLGVSA 191 Haloterrige...
WP_015320042     131 SD----DGSPLV-SL-GVlAATRD---GVTTWVPIRGVAL-RNAtLRLVVPQV------AADWLGPQ--ADASVVLGVGA 192 Natronococc...
WP_049954238     130 VGT---DRYPLV-SL-GVlVAEKR---GTTTWVPIRGQAL-HSTtLRLSVPEA------FAEWCEPA--ATASVVLGASA 192 Halostagnic...
jgi:Snov_1276    118 FLHHDRDGHAYT-ND-NL-LISKHPDTGVYDWGIYRSMFRSKNEkSVDMTCTSHRQRIhAMAAAAKGqNLEVAMVIGGPT 194 Starkeya no...
jgi:Mnod_8148    126 FLHHDRDGHAYI-ND-NL-VVSKDPDTGVTDWGIYRSMFRTINEkNFDMTCASHRGRLnALKYQARGqDMPIAIVLGGPT 202 Methylobact...
jgi:Gura_2520    129 TVWNPCDGGPYF-TM-GV-VRVRNPGNGAANVSVNRLQVKDRNH-LTIFTNKERGLGRaIWNYWEKGePAPVVVTFGGDP 204 Geobacter u...
4IWS_A           236 AALAAAG-M---PL-P--EGVSEAGYVGALV----GE-PVEVVRTQTNG-LWVPANTEIVLEG--EISL--DE-T-A-LE 295 Pseudomonas...
WP_013110408     229 ACYAMD--SrwlNLhPacWGRDLWEFLGRQR----ES-GFVVARARTSD-IDVAGEAEMILEG--VIDT--G----V-VN 291 Planctopiru...
WP_011323419     193 DALLSAY-L------PwfTGARQREAFPVAR----GPdSLSVSRHRG---MLIPTSSEVVVDG--RVVGdaG----A-LE 251 Natronomona...
KHU:HacjB3_15561 193 APLVTAL-----------QGWTLDRTTSAVPklaaALgETAVVDIDG---RTVPADAEVRLDG--SIIDvnD----G-VS 251 Halalkalico...
WP_012945234     192 APLIAAL-----------QGWTQGQTTPSVPnlaaGLaDVSVTTVGS---RTVPSDAEVRIDG--RMNAveSSvT-E-ET 253 Haloterrige...
WP_015320042     193 VPLVAAL-----------QGWTQDRITPDVPgltaGIgDVSMATVDS---RTVPSSADVRIDGgmTVDRtaP----E-PS 253 Natronococc...
WP_049954238     193 CSLLAAL-----------QGWTQDRTTPAVPelaaGLaDIPMATVDS---RVVPADAEVRIDG--TLRVveA----E-PR 251 Halostagnic...
jgi:Snov_1276    195 LDKISAL-V---GV-P--GDTDDFEVLGGFY----GA-PAKMVKCETID-VMVPANAELVLEC--ELMA--TE-GlNfDE 256 Starkeya no...
jgi:Mnod_8148    203 LDKIAAL-A---GV-P--PETEDFDVLGSFY----GA-PAELVKCETSD-LFVPANAEIVLEG--EVMA--TE-GwVyDE 264 Methylobact...
jgi:Gura_2520    205 FYLLAAIdT------Pg-VDDDEMALAGGIK----GQ-PLEVAYGEICReLDFPAGAEVVFEG--VVHP---EsY-E-DE 265 Geobacter u...
4IWS_A           296 GPMG------EYHGYs-F-PIGKPQPLFHVHALSFRDQPILPiCV-AGTPPe-ENHTIWGTMISAQLLDVAqNA----GL 361 Pseudomonas...
WP_013110408     292 VPHRle---tRRSGW--QsEVAE-FPLARITAITHKALPIVPmVLpe-----tRESHLADRLLEQVS-----RSrlssII 355 Planctopiru...
WP_011323419     252 EPLAgwerllDTTTV-----------DIAINEIRTRNSPTVPfAS-LGAPL--SDDIQLAGLLEA--AKLHrRInsywGV 315 Natronomona...
KHU:HacjB3_15561 252 GPIAvwergcETVGV-----------TVEVDAIATREDPVVPfIP-LGAPL--TDDLHLTALVEA--AELYrRIngywGV 315 Halalkalico...
WP_012945234     254 EPRAaweltcETATV-----------DVNVETVAVREDPLVPfTP-LGEPL--TDDIHLMCLVET--AKLFrRVnnywGV 317 Haloterrige...
WP_015320042     254 GPKAawerscETAVI-----------DMSVDRIATREEPVVAfTP-LGEPL--TDDLHLVSLVEA--AQLFrRVnsywGV 317 Natronococc...
WP_049954238     252 GPNAaweltgDTATI-----------EVSADRIATRESPIVSfTP-PNGPM--TDDVHLTSLVEA--AQLFrRVnnywGV 315 Halostagnic...
jgi:Snov_1276    257 GPYG------EFTGM--YgGGMKHNYRLKVKAMTYRKNPIYQhCTiGGMHPwyTDNMLQLPAIEADLYGALrLA----GI 324 Starkeya no...
jgi:Mnod_8148    265 GPYG------EFTGM--YgGGMKHNPRVVIHCMTYRKGAIYQtATiGGAHPgfTDNMLQLPAVESDIYGALcAG----GI 332 Methylobact...
jgi:Gura_2520    266 GPFG------EVNGYlsEqGIAP---VMEIQAVTHRDEPVFS-GTyAGIPPv-ETTVIQDLMIEATLTKTLlKS----GV 330 Geobacter u...
4IWS_A           362 -P-VDMVWCSYEAATCWaVLSIDVqRLAaLgtdAAAFAArVAETVFGSHAgHLVPKLILVG-NDIDVTEIDQVVWALATR 438 Pseudomonas...
WP_013110408     356 -PeLNELHFPALQEGHQ-LIVASLkSSD-----VGRTRQ-LIHAIWSL-PiLSEAKLVIIVdDDVNIRDQLAVWRAIVRE 426 Planctopiru...
WP_011323419     316 sP-IEWLLIPPEARLNFcIVASEIl-------yAGFEWQ-LANALF--TFsDSFDKVLILd-TDVPSTDLGKALQDMWVK 383 Natronomona...
KHU:HacjB3_15561 316 sP-VSWIRLPVEGRLGLcLVSSEIl-------ySGFEWQ-LANVLF--SFsDFFDKVLILd-EHTEPDDLARALDDMWVK 383 Halalkalico...
WP_012945234     318 sP-VEWIQLPVEGRLGFcIVSSEIl-------yAGFEWQ-LANTLF--SFsDLFDKVLVLd-EQADPTNLARAIDDMWVK 385 Haloterrige...
WP_015320042     318 sP-VEWIRLPVESRLGLcIVSSEIl-------yAGFEWQ-LANTLF--SFsKLFDKVLVLd-ENADPTNLARSIDDMWVK 385 Natronococc...
WP_049954238     316 sP-VEWIQLPVEGRLGLcIVSSEIl-------yAGFEWQ-LANTLF--SFsNLFDKVVVLd-EQADPTNLARAVNDMWVK 383 Halostagnic...
jgi:Snov_1276    325 d--VVEVRSPAGGL-SN-IAYAKI-RPL-G---AGDAKQ-ALGLMLTCSK-QGLPKVAMVFnDDVDIWDDQAVLAAMAFR 393 Starkeya no...
jgi:Mnod_8148    333 h--VLDVRCPAPGL-SN-IAYARI-KPQ-G---GGDAKQ-ALGIMLTCSK-QGLPKIAMVFdADVDIWNDERIAQSMAFR 401 Methylobact...
jgi:Gura_2520    331 d--VAQIHIVPGSGGHQ--AAISIrKRN-----ENDLRR-VIRFSMAV----LPIKQVLVTdADVDVSIPEQRQWVLSTR 396 Geobacter u...
4IWS_A           439 AHPLHDHFAFPQIR 452 Pseudomonas aeruginosa PAO1
WP_013110408     427 ASFPEDIEYsrgtg 440 Planctopirus limnophila
WP_011323419     384 AHPSHNWIfstsda 397 Natronomonas pharaonis
KHU:HacjB3_15561 384 AHPSNDWIFsdpna 397 Halalkalicoccus jeotgali B3
WP_012945234     386 AHPANDWIFsepna 399 Haloterrigena turkmenica
WP_015320042     386 AHPGNDWIFsepna 399 Natronococcus occultus
WP_049954238     384 AHPANDWTFsepna 397 Halostagnicola larsenii
jgi:Snov_1276    394 YMPDRDTVIIKDCN 407 Starkeya novella DSM 506
jgi:Mnod_8148    402 YMPDRDTIIIPQCN 415 Methylobacterium nodulans ORS 2060
jgi:Gura_2520    397 FDPAKDIHLIPHAP 410 Geobacter uraniireducens Rf4
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