Conserved Protein Domain Family
NfeD

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pfam01957: NfeD (This model is not part of the current CDD release)
NfeD-like C-terminal, partner-binding domain
NfeD-like proteins are widely distributed throughout prokaryotes and are frequently associated with genes encoding stomatin-like proteins (slipins). There appear to be three major groups: an ancestral group with only an N-terminal serine protease domain and this C-terminal beta sheet-rich domain which is structurally very similar to the OB-fold domain, associated with its neighbouring slipin cluster; a second major group with an additional middle, membrane-spanning domain, associated in some species with eoslipin and in others with yqfA; a final 'artificial' group which unites truncated forms lacking the protease region and associated with their ancestral gene partner, either yqfA or eoslipin. This NefD, C-terminal, domain appears to be the major one for relating to the associated protein. NfeD homologues are clearly reliant on their conserved gene neighbour which is assumed to be necessary for function, either through direct physical interaction or by functioning in the same pathway, possibly involve with lipid-rafts.
Statistics
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PSSM-Id: 514620
Aligned: 604 rows
Threshold Bit Score: 30.9019
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_066279709  88 VEALLGLRGEVLlpitPDPGPRalGQ--VKLTnGETWTARMlapDGtRTLVTGTTVVVTAIEGSTAVVVP 155 Frondihabitans sp. PAMC 2...
WP_048096390 367 AEALIGERGEVV----IFSGGK--GM--AKVH-GELWRI-----ESeEELSRGDEIVVVGRDGLTLKVKK 422 Geoglobus ahangari
WP_015591495 371 GEALIGKRGKVM----EFSDGS--GL--AKID-GEIWKIES---DD--ELREGDEVIVTGRDGLILSVKR 426 Archaeoglobus sulfaticall...
WP_013684557 368 GEALVGERGEVI----SFQNGK--GF--AKVR-GEIWTFES---ED--ELKPGDKIVVVGRDGLILRVKR 423 Archaeoglobus veneficus
WP_012965281 364 GEAIIGKRGEV-----ISVNKR--AF--AKIG-GEIWEVVC----G-EKLEVGDEVEVVGREGLKLKVVK 418 Ferroglobus placidus
O28493       372 VGEVVGEKGEVL----EFSNGR--GF--ARVR-GEIWKVVS----D-EELEKGDEVEVIAREGLTLRVRK 427 Archaeoglobus fulgidus
WP_012939574 359 VGEVVGEIGEIV----EFSDGK--GF--VKVR-GEIWRCKS----D-EELKKGDEVVVVRREGLTLWVKR 414 Archaeoglobus profundus
WP_020875421 398 VESLVGKSAEVL----EWSHGQ--GY--VRLG-GERWKAVG---EG--NFSPRDRVEVLAGRGLVLVVHK 453 Desulfococcus multivorans
Q83BM1       400 REAVIGKRGVV-----NVSDKR--MW--VRIE-GERWQCKS----D-VPLQDGDEVVVERLEGLFCVVKP 454 Coxiella burnetii
KEA61678     380 YRAGPDKEHCVT----IEQVYD--GQvlARFE-GELWSVRC---PD--PLQVGDRVRVHEIDGLTLVVDK 437
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