3VYS


Conserved Protein Domain Family
HypD

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pfam01924: HypD (This model is not part of the current CDD release)
Hydrogenase formation hypA family
HypD is involved in hydrogenase formation. It contains many possible metal binding residues, which may bind to nickel. Transposon Tn5 insertions into hypD resulted in R. leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas.
Statistics
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PSSM-Id: 514601
Aligned: 233 rows
Threshold Bit Score: 481.511
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3VYS_B        12 EVAMKLVEKIREEAKTld----gEIRIMHVCGTHEDTVTRHGIRSLLPENVKVVSGPGCPVCITPVEDIV-AMQLIMRka 86  Thermococcus ko...
WP_014811870   8 QAAQALVREIKNLAGKya----kRMRFMEVCGTHTMAIHAAGLKSLFPDNISLVSGPGCPVCVTEKHFIDhAILLAKKy- 82  Desulfomonile t...
WP_006192759  11 EAARALLADIERLAAg------rHLRYMEVCGTHTVAIFRAGLRQILPENIELVSGPGCPVCVTSDAYMDkAIACAKMe- 83  Selenomonas spu...
WP_012282574  17 QMAEQVRERLDRLTDRlg----rRVNVMEFCGTHTAAISRTGIRELLKPHVHLMSGPGCPVCVSDYVDIDrVIALAGMs- 91  Heliomicrobium ...
WP_015739961  22 ELAARVCDRLg-----------rRLVFMEVCGTHTMAISRSGIRSLLRDYLELRSGPGCPVCVTDQADIDrMIALARLe- 89  Ammonifex degensii
WP_012302726  11 elgrALLEKVIALADRardklgrPPVFMEVCGTHTVAISKAGLRSLLEEKLKLRSGPGCPVCVTDYGDIDaMVAFGRLp- 89  Candidatus Desu...
WP_244392394  25 ytaHHVIEAIGQRLTK-------PLTFMEVCGTHTVSIFRSGIRSVLPPDLSLISGPGCPVCVTDQGEIDcAINLLDMp- 96  Aminobacterium ...
Q6API1         8 pspeALLEELHRVVs-------kPIRLMVVCGTHNRAILRYGIREELPDFIELVAGPGCSVCVMPTGHVDaFVKVARQp- 79  Desulfotalea ps...
Q6AQR5        11 KLAKPLVAELRRSVTK-------PLRIMEVCGSHTMSIFRNGIRSILPEGMELLSGPGCPVCVTSAAHMDaFISIAERd- 82  Desulfotalea ps...
WP_015403423  11 TLAEPLLKELRRSVTK-------PFRVMEVCGTHTMSIFRSGLRTLLPEEIELISGPGCPVCVTSASHIDaILAMAELq- 82  Desulfocapsa su...
3VYS_B        87 reegeEIILTTFGDMYKIPTPM-GSFADLKSEGF-DVRIVYGIFDTYRIAKENpDKTVVHFSPGFETTTAPAAGMLNVaa 164 Thermococcus ko...
WP_014811870  83 -----DATVVTFGDLVRVPGST-GSLASWRSEGG-SVRVIYSPLDSIEVALSQlPRPAVFLGVGFETTIPTVAATLKAaq 155 Desulfomonile t...
WP_006192759  84 -----AVTVATFGDMLKVPGSR-ESLADARAAGA-CLRVVYSPLDALAAARENpERTVVFLGVGFETTAPTEAAAVLSak 156 Selenomonas spu...
WP_012282574  92 -----GAIIATFGDMMKVPGSR-TTLLEEKARGA-DVRVVFSSLDALAIARENaDRAVIFVGVGFETTAPTAAVTVEQav 164 Heliomicrobium ...
WP_015739961  90 -----GVVVGTFGDMLRVPGSS-SSLERERALGA-QVKIFYSPAEAVAWAAANpSQQMVFLGVGFETTAPGVALSIKEae 162 Ammonifex degensii
WP_012302726  90 -----GVTVGTFGDMVRVPGSR-TSLEREKARGA-DVRVFYSPADAVKWAKENpERQMVFLGVGFETTAPAVALSVAQak 162 Candidatus Desu...
WP_244392394  97 -----DITMATYGDMLRVPGTR-GSLSERKSEGK-DVRLITSAAQALSIAEDNpEREIVFLAVGFETTAPATAATILEaa 169 Aminobacterium ...
Q6API1        80 -----DVITATCEDLLKVRGSK-ESLADVLNEGVhRVEIISSPRQALELAYVEeDKIVVYPAVGFEATAPSIAETILEaa 153 Desulfotalea ps...
Q6AQR5        83 -----GVRVAIFGDLFRVPGSQ-GSLANASSRGA-KVDIVYSPMDALEIAKNNpDELVVFLGVGFETTTPTIAATIMAak 155 Desulfotalea ps...
WP_015403423  83 -----NTRIALFGDLFRVPGSNgLSLANASSQGA-KVDIVYSPMDSLNLARKYpEELIVFLGVGFETTTPGIAATILAak 156 Desulfocapsa su...
3VYS_B       165 QEELENFKIYSVHRLTPPAVEVLLKQGTV-FQGLIAPGHVSTIIGVKGWEYLTEKYGIPQVVAGFEPNDVLMAILMLIRM 243 Thermococcus ko...
WP_014811870 156 ARGVENLFVLPAFKTIHQPLKILAEQQD--LNGFLLPGHVSAIIGSDCYRYLSEDFGKPGVIAGFEPLDILLAVRDLVRM 233 Desulfomonile t...
WP_006192759 157 EEGLKNFCVLSAQKLVPPAVKLLLADPDVhVDGFLLPGHACVVTGTRPYAFLADEAHKPGVVAGFTPLAILRAVWRLVRQ 236 Selenomonas spu...
WP_012282574 165 QEGRDNFFLYSLHKITPPAMMALLPDRDLqVDGILLPGHVSLITGRGYWDFLSRDLALPGVVAGFELLELLSAVDALASS 244 Heliomicrobium ...
WP_015739961 163 QKGISNYSVYVSHKLIPPALKALLADPENrLDGFLLPGHVSTIIGRRAYLFL-EEYGMPAVIAGFEPNEILDAVRELLEM 241 Ammonifex degensii
WP_012302726 163 ALGLKNYSVFTVHKVVPPALAALGSDPEMkLDGLILPGHVSAIIGRRAYDFIAEEYGLPSVITGFETLDIVDALYNLLQQ 242 Candidatus Desu...
WP_244392394 170 EKNITNFSILVYHKQTPPVLEQLVKDPDLkINGFILPGHVSVILGHKAYRFLADHYGVPCAIAGFEPMDILLAIADLVFQ 249 Aminobacterium ...
Q6API1       154 QNGVGNFCVIPSIRLLPPTIDALLLDPQLsIQGLLCSDHINTISDTEAYADLARKHSLSCCIAGFEKAEILQGILSMVKQ 233 Desulfotalea ps...
Q6AQR5       156 IQKIKNFAVFSTQKTMPAPLIALLQDPELkIDGLLCPGHVSAIIGSEVYEPLARDYNLACVVAGFETADILGSLIQLARQ 235 Desulfotalea ps...
WP_015403423 157 NSALDNFAVFSTHKTMPPPLLALLDDPELqIDGLLCPGHVSSIIGAGAYQPLADTYKLACVVGGFEPADILQALILMARQ 236 Desulfocapsa su...
3VYS_B       244 YKEGE-ARIINEYERAVKYEGNVVAQKMIDKFFEVVDAKWRALGVFPKSGLELRKEWKDFEIRSFYKVEvPKnlPDLEKG 322 Thermococcus ko...
WP_014811870 234 TLEKS-PAILNDYQRVVRHHGNPVARQIMNEVFEPADASWRGLGMIPRSGLAFRESYARFDAAARFPVevPE--SKDDPR 310 Desulfomonile t...
WP_006192759 237 TAANE-ARIENEYGSVVREEGNPAALAVLARVYEETADEWRGLGVIERSGLRMREEFAAFDAERRLPVEvER--VEKKTA 313 Selenomonas spu...
WP_012282574 245 LLEER-CAVINAYGRAVREEGNLSALDALARCFDLQEGHWRGLGIVPASALKLKPELAPWDAEVRFPLenRP--AAPPKG 321 Heliomicrobium ...
WP_015739961 242 LLEGK-AEVRNAYSHVVREEGNLRAQKLLSEVFTVCDVPWRGFGCIPQSGLRLREELAAFDAARRFELPpvE--SRVPPG 318 Ammonifex degensii
WP_012302726 243 LISDDpPRVVNGYTRVVREEGNVRAQETLDRFFQIADVSWRGFGTIPGSGMELKPEYREFDARARFapevAA--PRIPQG 320 Candidatus Desu...
WP_244392394 250 HSNGE-SALHSLYPRAVRPEGNQKALDLISKVFTPCSARWRGLGLIPSSGYALKEEFAAFDALLRFGITiPT--PKPPAG 326 Aminobacterium ...
Q6API1       234 IHRGE-SMVDASGAMVYSMEETARARRVVEEVFFPTETAWRGLGSIAESGFVIRDELALYDATKRFNVrfAE--GTDQCM 310 Desulfotalea ps...
Q6AQR5       236 VNAGE-FKVENCYNRVVCKDGNPRARAMVERIFEPCDMQWRGLGMIPESGLKIREEYGEFDAERRLEIElTE--VAEPKG 312 Desulfotalea ps...
WP_015403423 237 IANGE-ARVENAYTRAVRWEENSRAQQMVRAIFKTADMEWRGLGVIPESGLAIREEYSHYDAERRLNIKlTP--ATEPKG 313 Desulfocapsa su...
3VYS_B       323 CRCGAVLRGLALPTDCPLFGKTCTPRHPVGPCMVSYEGTCQIFYKYG 369 Thermococcus kodakarensis KOD1
WP_014811870 311 CLCAAILTGSRTPDRCGLFGKECTPEEPVGPCMVSSEGTCAAYYKYG 357 Desulfomonile tiedjei
WP_006192759 314 CRCGEVLRGAVRPTDCTLFAKACVPTHAVGPCMVSVEGVCAAWYKYG 360 Selenomonas sputigena
WP_012282574 322 CLCGEILKGKKTPFDCPLFASRCEPARPVGPCMVSHEGTCATYYRYE 368 Heliomicrobium modesticaldum
WP_015739961 319 CACGEILKGKLTPKDCPLFARACHPTHPVGPCMVSSEGACAAYYRYE 365 Ammonifex degensii
WP_012302726 321 CRCGDLLKGKLTPRDCRLFATACTPSHPVGPCMVSSEGACAAFYQYE 367 Candidatus Desulforudis audaxviator
WP_244392394 327 CCCGDVLAGHITPLKCPLFAAACTPMTPVGPCMVSSEGSCSAYYKYN 373 Aminobacterium colombiense
Q6API1       311 CHCNEIISGRALPPDCPAFGMACTLQNPVGPCMISNEGICAAYFKYK 357 Desulfotalea psychrophila
Q6AQR5       313 CLCGEILKGQTIPPRCPLFNKGCTPMNPVGPCMVSSEGTCAAYYKYG 359 Desulfotalea psychrophila
WP_015403423 314 CRCGEILKGKEVPSQCPLYGKRCTPGNPVGPCMVSSEGTCAAFFKYT 360 Desulfocapsa sulfexigens
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