Conserved Protein Domain Family
CbiM

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pfam01891: CbiM 
Cobalt uptake substrate-specific transmembrane region
This family of proteins forms part of the cobalt-transport complex in prokaryotes, CbiMNQO. CbiMNQO and NikMNQO are the most widespread groups of microbial transporters for cobalt and nickel ions and are unusual uptake systems as they consist of eg two transmembrane components (CbiM and CbiQ), a small membrane-bound component (CbiN) and an ATP-binding protein (CbiO) but no extracytoplasmic solute-binding protein. Similar components constitute the nickel transporters with some variability in the small membrane-bound component, either NikN or NikL, which are not similar to CbiN at the sequence level. CbiM is the substrate-specific component of the complex and is a seven-transmembrane protein. The CbiMNQO and NikMNQO systems form part of the coenzyme B12 biosynthesis pathway. The NikM protein is pfam10670.
Statistics
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PSSM-Id: 485389
Aligned: 89 rows
Threshold Bit Score: 71.4561
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012448360   5 HLPDGIIPVPWWLAGYLVAVLIIYLLL-----SRVDSTe--aRyrIPKAAM-AAAFMLVAMSVPLGF-----LPIHLSMA 71  Natranaerobius ...
WP_014087991   2 nLPAAFFPLWGQWSTLLAALGLLGWAA-----SRVRWRel-dH--VALNAW-LGACVLTMAMWMMKGglkpgLSFHLLGA 72  Pseudogulbenkia...
Q1H3Z8        16 NLPDYLVPVAWQWIANALALTLLAYAVikapwRHLSDP--------ALQHVfLGSIVTLMVIWSIKAgirpgLNIHLLGA 87  Methylobacillus...
WP_013442952   2 NFPDHLLPTELCWAANALSLAIILACVksapwRHLKDT--------SLLNVfMAGIVGLMLVWAVNAgikpgLNFHLLGA 73  Methylovorus
WP_013294148   2 NLPATLFTGDSLLLANYAFAFLLYRAVrcapwQILLKN-------QDMFNAlIGLIFCTAAFWQMSAgirpgFNFHLIGA 74  Gallionella cap...
WP_013030114   2 NLPAQLFANDWLWLANFVFGFLLYRAVreaswRNLLDN-------SIMVHAlTGLLFGAFVFWQFNAgirpgFNFHILGS 74  Sideroxydans li...
Q2IN89         2 HVPDGFLSPAITLPAYAAAAPLWALAA-----RRHLGRdaadA--LPVVGA-LTALAFVVQTIAIPVpg--gTSTHLVGV 71  Anaeromyxobacte...
3_pfamImport   1 HIEVGIIDPARVALANAAALSLVAsq----lpALWRHP-------LMLPKTaLAAIAFSIMMQVWHLpv-gpSELHLIGA 68 
WP_012168679   2 HIEPGILSAAKVVAANAAAIATLAty----apKLVRNP-------VILVKTvLAAAFFSVFMEIFHLpv-gaSELHFVGA 69  Azorhizobium ca...
WP_012586100   2 HIEPGILSGAKIAAANLAATALVAae----apQLLRKP-------QRLLRTlLAALFFSVFMQSFHTpa-gaSELHFIGA 69  Thauera aminoar...
WP_012448360  72 VLAGILVGpGIGFLSVFVVNFILAL-VGHGGITIVGLNTLVIGLEVLVGAKiFSYL-Ls--------KTTVWKAAFLavi 141 Natranaerobius ...
WP_014087991  73 AILTLMMGhWLALLALAIVLAGVTA-YGAGDWLALGLNFWLMAVLPVTLVS-TVLRlTqrllp-pnlfVYVFVGAFL--- 146 Pseudogulbenkia...
Q1H3Z8        88 TALCLMFR-WQLALIALALILIGITaFGMGGWSTLGINFLIMAAIPVAFSY-NVFR-LvdsklpnhliiyIFACGFL--- 161 Methylobacillus...
WP_013442952  74 TLLSLMFG-PQLAIIALALVLLGITaFGMAGWLSYGLNLMLMVVIPAMFSW-GVFR-WvdrklpnhlfvyIFVVGFF--- 147 Methylovorus
WP_013294148  75 TLFLLMFG-WPIALIALTLIMTGSWlYSGQEIATLGINGLLMLAVPMLFGE-ALLR-FcqrylpknlflfVLLNGFA--- 148 Gallionella cap...
WP_013030114  75 TLFLLMFG-WQVATVSITLVMLATWlRTDMALVTLGINGLLMIAIPVLFSD-WLLR-FskrhlpknlflfVLWNGFF--- 148 Sideroxydans li...
Q2IN89        72 TLLALLHGpLLAFLCESLVLLLQALfFGAGGVTVLAVNALAMGLLGPLAGW-AVHRlLrr--------rAQRAAAFL--- 139 Anaeromyxobacte...
3_pfamImport  69 TTIYLLFGfTPAILGFALGLVLQAFlFEPGDIPHLGVNALSLMLPMMVVHYtLGKR-Lfsg----eiGKRFNLARVL--- 140
WP_012168679  70 SAVYFIFGfVPTLFGFALGLLLQGAlFEPQDLVHLGVNSLSLMVPLIAVHEtFGKR-Ffar---desKLPVSWAQIL--- 142 Azorhizobium ca...
WP_012586100  70 MPIYLTLGfVPTLLGFGLGLLLQGGvFEPADLLHLGVNFLSLAVPLVALHAtLGRR-La-------sGAATRVGSVL--- 138 Thauera aminoar...
WP_012448360 142 pALIVSLVFTVSLVGATVSWAeALPyhqhdcdhdhdhddrshanhnghdshghsegngegietalseihiLTLTGWTAL- 220 Natranaerobius ...
WP_014087991 147 -AGGASLFATGLAGIAVLGMA-GAy--------------------------------------------pWDELLSEAL- 179 Pseudogulbenkia...
Q1H3Z8       162 -CAGLTISMCGLSAVLALSAM-------------------------------------------------QAYPPDYLFs 191 Methylobacillus...
WP_013442952 148 -CAGVAITLCGLASSFVLTES-------------------------------------------------AIYKREYLGe 177 Methylovorus
WP_013294148 149 -CAALASMLMMASTTLVLLAL-------------------------------------------------THYTWPEIQy 178 Gallionella cap...
WP_013030114 149 -CSMLSIVLNVLVTTLLLLLL-------------------------------------------------SRYSWEQIQh 178 Sideroxydans li...
Q2IN89       140 -GAWISMQVAAGAVALVLGLQ-HRIapey-------------------------------------fpvpFAVSATALL- 179 Anaeromyxobacte...
3_pfamImport 141 --GLDATYYAGVSAMVGFWLAiSNDg-------------------------------------------lAFADWGRWV- 174
WP_012168679 143 --KFDAAYYSGVVSMVGFWLLmGNEa-------------------------------------------tPVYDWAIFA- 176 Azorhizobium ca...
WP_012586100 139 --KLDAAYYAGVAVMVGFWLAmGEVa-------------------------------------------tPFAAWAAFA- 172 Thauera aminoar...
WP_012448360 221 --LVILAV-GITlEAILTAIIANYIYKVKPD 248 Natranaerobius thermophilus
WP_014087991 180 --PFYFLL-SWS-EAFTSGLIMAILIVYRPR 206 Pseudogulbenkiania sp. NH8B
Q1H3Z8       192 nyLPYFILiGWS-EAFVTGMAITLMTAFRPH 221 Methylobacillus flagellatus KT
WP_013442952 178 hyLPYYIFmAWS-EAMLTGMAVTLMAAFRPS 207 Methylovorus
WP_013294148 179 hyLIPAPIlIFA-EAFATGAVITAFTVSRPE 208 Gallionella capsiferriformans
WP_013030114 179 yyLVATPIlMLT-EGFVTGMLITAFTVFQPQ 208 Sideroxydans lithotrophicus
Q2IN89       180 --VPSLAVtGLV-EGLYTVLALALLRKAdlr 207 Anaeromyxobacter dehalogenans 2CP-C
3_pfamImport 175 --IAYAPV-FAI-EACITFIIVLAVRRIRHL 201
WP_012168679 177 --ASYLPL-VLC-EPIFTFVALKLLGRIENN 203 Azorhizobium caulinodans
WP_012586100 173 --SAYLPV-ALI-EPVLTVALVRLLQSQAHR 199 Thauera aminoaromatica
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