5VFK


Conserved Protein Domain Family
DUF61

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pfam01886: DUF61 
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Protein of unknown function DUF61
This Domain of unknown function 61 (DUF61) family of proteins are widely distributed in archaea. In crenarchaea, the genes of DUF61 proteins are in an operon containing two genes of box C/D RNA protein complexes. The NMR structure of a DUF61 family member from the hyperthermophilic archaeon Sulfolobus solfataricus revealed a rigid core structure and flexible N- and C-terminal regions, including a negatively-charged independent C-terminal helix. The core structure consists of N- and C-terminal subdomains, in which the C-terminal subdomain shows significant structural similarity with several nucleic acid binding proteins.
Statistics
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PSSM-Id: 426492
Aligned: 36 rows
Threshold Bit Score: 84.9536
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5VFK_A               3 DKIFEIGLKDIFSSSPAEYVTIKDALDGKLKIRL-NNNFYHEIKKDEVEKLSSRIPLYLWSLVKIPFIFIKSSEig---e 78  Saccharol...
WP_015325677        14 MRWMRTEMNKLNDGIVSERKSLAQLLLEEKPTARtKGGKDHLFDTATLRNLSEKLPKNLHDKLKLPILFFFDNHvpd-sc 92  Methanome...
jgi:Mmah_1834       14 ARWMKGEMSRINRAIVAQRKTLAQLLEEEVPQSRtRVERRYVFDKQVIRMLGDKLPAELRDRLKLPILFFFDFRved-sc 92 
WP_012123535         8 VRNVIEEFRSINQSVPQER-VLLKAAAEGRRLIKlRDGSEHLMDTDELNEMINLLPSWMKWVVRVPLLLAYEPLtg---v 83  Ignicoccu...
CBRAS:FFONT_1219    12 rKKVILDLSAIND--PVEEYVRLNEVGNEDVLLKtKSKSFFILKKDDIAKLKENLPSYFHEMLALPIEINILVTpnn-ki 88 
jgi:Calag_0323      22 qKKILDKINETQKLWPKETLNLIEVYNGKTSVLL-ESNEYHEFDKEEIKTVLEIVPQYFWKFIKLPILLRYNKDsegrsw 100
WP_013776187         3 DKILELGLKEIFGSSPAEKVTLKDALQGKNRIKL-NNGFYHELNLAEVKDFSSKVPLYLWSLVYLPIIILKLPEpg---q 78  Acidianus...
Q4J959               3 DKVFDLGFKSLLSYYPDEFVTLKDALNGKLSIRLkSKDLRHRFDKLEVEKLSQVLPIYLWDLVKLPFIVVKTLNtg---e 79  Sulfolobu...
BAJ46753             5 DDWLAETMRHVNDALPRRAEKLSTLLEMEKPSVEtVGGGRHYFDKKELEELLRKLPSEVSENLYLPIVFAKNPElge-st 83 
licsiro:TALC_00419   1 ------mLAGMNSNIPVDRRSLMDYLENGDLTYRtKSGETVEFGREGIDYLASITNDQEKLTLRLPVFVATDVTaer-sa 73 
5VFK_A              79 YFVSGEQWn-KKAISILLGRE-----ISNVILNV-DVEKLLREYTS 117 Saccharolobus solfataricus P2
WP_015325677        93 YLNDAHALqaLQTLEEISRLRtm--qQGRLWVGRsIAYTIMKKYPT 136 Methanomethylovorans hollandica
jgi:Mmah_1834       93 FLNDRHALeaLQMLSELGHMYrm--rQGKVWVGKsMAYSIMRKYPT 136
WP_012123535        84 VKVLGSEWd-EKAVRRLVGIDk----EEPLRLYH-----LERLITR 119 Ignicoccus hospitalis
CBRAS:FFONT_1219    89 YMLNEDLWq-RRAVRYILNKKle--yEPKKYITNdELNTLISLMPS 131
jgi:Calag_0323     101 YNVLGDTWq-KRFVEILITGQysf-----dgIEElDVEMFLKILKK 140
WP_013776187        79 FSLEGSEWd-KKAVSLILNKEe----GDKIILNTaEVEDLLRRYKT 119 Acidianus hospitalis
Q4J959              80 YAVSGSQWe-VRSLSIILQKE-----IKNTFLSTgDVEKLIKEYKS 119 Sulfolobus acidocaldarius
BAJ46753            84 YIVKSRGSe-AEAFRILMGLRtlprvGNQPYTYKpLVTEFINRYPT 128
licsiro:TALC_00419  74 WKIEGRTE--VAVISRALNRRvh--sEDRMPVYYpDIAEMKKLIPG 115
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