Conserved Protein Domain Family
HcyBio

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pfam01837: HcyBio 
Homocysteine biosynthesis enzyme, sulfur-incorporation
This presumed domain is about is about 360 residues long. The function of this domain is unknown. It is found in some proteins that have two C-terminal CBS pfam00571 domains. There are also proteins that contain two inserted Fe4S domains near the C-terminal end of the domain. The Methanothermobacter thermautotrophicus gene MTH_855 product has been misannotated as an inosine monophosphate dehydrogenase based on the similarity to the CBS domains. Based on genetic analyses in the methanogen Methanosarcina acetivorans, this family is a key component of the metabolic network for sulfide assimilation and trafficking in methanogens. It is essential to a novel, O-acetylhomoserine sulfhydrylase-independent pathway for homocysteine biosynthesis, and may catalyze sulfur incorporation into the side chain of an as yet unidentified amino acid precursor. The DUF39-CBS and DUF39-ferredoxin architectures repeatedly occur together in the genomes of methanogenic Archaea, suggesting they may be of diverged function. This is consistent with a phylogenetic reconstruction of the DUF39 family, which clearly distinguishes the CBS-associated and ferredoxin-associated DUF39s.
Statistics
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PSSM-Id: 426465
Aligned: 87 rows
Threshold Bit Score: 357.962
Created: 19-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013720221    22 AVVLTAEEVSRLVEDEDRSSLEEVDVVTTATRAVMSGTYAILSFPVAEPGSFQraRNVWLNGISAQVGpcpnenLGLLDL 101 Methanothrix ...
O27719          38 AAVFTADEIKDMVRDGDVPSADEVDVVTTATCGVMSGTAAVMHLRVSEPGSFRkaASVELNGIPAYPGpcpnenLGSVDL 117 Methanothermo...
Q2NEW5          13 AVVLTAEELKTKLRNNEEVTVDDVDVVTCGTSGIMSGTAALFHMPVSEPGKFNkaKEVYINGIPAYPGpcpnelLGSVDV 92  Methanosphaer...
CDG64549        27 ATILTAEEVTSMVRAGEEPTAQDVDVVTTGTCGIMSGTAALFHIPVAEPGTFKkaRKITLNGVPGFPGpcpnewLGSVDL 106 Methanobacter...
WP_012619317    16 AVVLTADELKARIREGETVTPEKVDVVTTGTFGVMSGTMAVLSFSVAKPGTFQkaEQVLLNGVPAYPGpcpnerNGILDL 95  Methanosphaer...
Q2FTG3          16 AVILTASELKKRITQGD--TVSDVDVVTCGTCGVMSGTYAVLSVPVAPPGTFSraDTISLNGVPAIPGpcpnerLGLVDL 93  Methanospiril...
jgi:Mpet_0281   17 AVVLTAGEFKKKVRDGERLSPDDIDVVTCGTCGVMSGTMAILSVPVAEPGTFRraDSITLNGVPAFPGpcpnegLGQVDL 96  Methanolacini...
AGI85515        18 AKVYTASEFKDMVRR-RDPSSREADVVTCGTFGVMSGTMAILCVPVAEAGTFKraDTITLNGVPATVGpcpnesLGLVDC 96  Candidatus Me...
jgi:Mzhil_0784  19 AVVLTSEEVCERVRDGETIGFDDVDVVTTATRGIMSGTYIVLSFKVAEPNEFKkaSSVWINGIPAYVGpcpnerLGILDL 98  Methanosalsum...
WP_020449614    18 AVVMTAQEIKNCTEK----EAAEADVVTTGTRGVMSGTYGVFTIPI-KSSKFSkaTSLSLNGICAYPGpcpnenLNLIEA 92  Candidatus Me...
WP_013720221   102 IVFGTACSRDRPDYGGGHLFRDLVEG-KTIQVEVQTDEGGLLQAEAGLEDMPQARMFGSRHAFKNYSAFVNPGSRsvrTI 180 Methanothrix ...
O27719         118 FIYGTGHSREDPDYGGGFLFRDLLLG-SEVEVRVTSVEGRVVESTVTMDDIETARIVGTRMAFRNYTALVNPGETpvkSI 196 Methanothermo...
Q2NEW5          93 MLYGTNHSETIDNYGGGFLLKDLIMG-KSVEVKVIDIEDNEFTKTITLDEIGTARLFGTRMAFKNYNSFTNPDSHaqkSI 171 Methanosphaer...
CDG64549       107 MIYGTSHSIKDPQYGGGFLFKDLLRG-KEIEIEVEDVEGNTIRTTATLDDFGTAQMIGTRFAFKNYTAFTNPSEDpvsSI 185 Methanobacter...
WP_012619317    96 VVYGTAHRDH--RYGGGHLFRDIVAG-HVIAVEVVAGE-QTLETMITLNQMGLARIIATRMAFRNYHAMINRSVDpiqTI 171 Methanosphaer...
Q2FTG3          94 MVFGTAHADD--RYGGGHLFHDLIAG-EEIHIAVTSAG-KDYEAYVTLSDLPFARLFTTRSAFKNYSAIINQSSGpvkTI 169 Methanospiril...
jgi:Mpet_0281   97 VVYGTSHASN--SYGGGNLFRDIASAeKEIEVQTEAGG-KNFECTVYGDELHYARMITSRSAFKNYSAFVNSGKDpvnTI 173 Methanolacini...
AGI85515        97 VVYGTSRRDG--SYGGGHLFRDMVAG-KSIEVEVSAEG-RTYRAERTLSEIPFARMVLTRGCFKNYTCFANFSDEdyaTI 172 Candidatus Me...
jgi:Mzhil_0784  99 IIYGTGYSKYDSSYGGGHLFKEMVEG-KTIEVEVETVEGYCFKHYTDMNEIPYAKYFATRHTFKNYLAFVNPSSEplsTI 177 Methanosalsum...
WP_020449614    93 VVFGTASAG---NYGAGMLFRDMLEN-EPVHVEAVSKDGKQISEEVFFEDMPYAKLMSTRNAFRNYSAMTNPLDHaltTI 168 Candidatus Me...
WP_013720221   181 FH-ARGFEPHCQGATFSGCGQINPLKCDPLLETIGIGTRILLNGAEGYVLGTGTRSSRDKPNLSGFADMHHMTAEYMGGF 259 Methanothrix ...
O27719         197 FN-AFEMPENCGGLSFSGCGDINPLENDPSMETVHQGTGVLLNGARAIVLGEGTRSSPIKPNLMLSGDLHDMKPRYIGGF 275 Methanothermo...
Q2NEW5         172 FN-ASPMEGPFNSYSFSGCGDVNPLANDPNQDVIKPGLKVLLNGAEGIIIDNGTRSSSDKPNLLLTANIKDMDPHYVGGY 250 Methanosphaer...
CDG64549       186 FN-AIDMEGPFKGISFSGCGELNPLQNDPQLNFMQKGNRLLINNSEGLFINTGTRSTPEKPNMMVTADMKSMDPHYLGGF 264 Methanobacter...
WP_012619317   172 FS-VTGLAGPCTEVSVSGCGEINPLENDPERRFIGTGTRVLLNGGTGYVIGEGTRSSQEKPNLSVYGDMKGMNPQMMGGF 250 Methanosphaer...
Q2FTG3         170 FS-ALPLQGTSTQATVSGCGEINPVENDPTLRFLSAGSPVILNGAGGRVIGTGTRSSPYRPNLSVHADLKEMDAHFCGGF 248 Methanospiril...
jgi:Mpet_0281  174 FS-VLPLSGGLTQATVSGCGEINPLQNDPDTRFLRSGAGVLLNGAEGLILGTGTRSSSEKPNLSVSAGMAGMNPEFMGEF 252 Methanolacini...
AGI85515       173 FSgPRPLRRSFGEASVSGCGEINPVQNDPELLYLRPGASALLNGAPAMILGCGTRSSPEKPNLSIEADMHQMRPELMGGF 252 Candidatus Me...
jgi:Mzhil_0784 178 FH-AADFKGNYSEATFCGCGEMNPIKNDPDLETIGIGTRVLINGAEGFVIGSGTRSSPDNPNLAAFADLHPMTGEYMGGY 256 Methanosalsum...
WP_020449614   169 FH-ALDFPSNYKELTFSGCGSINPIQNDPSLETIGIGTKVLMNGAEGFVTGTGTRSTAQSPNLTACADMKEMNPDYMGGF 247 Candidatus Me...
WP_013720221   260 VTGLGPECICSLAVPIPVTSPTILEEIARRDREIALPVNDINTR-TVIGQANYGDVWedvdlevefdpqrcrgckkclve 338 Methanothrix ...
O27719         276 RTAAGPEIFNTVAVPVPVTSERVLENLMVLNSDIKLPVADVRDRsRVITEITYEDVWsgdvrpvhhperctdcavclaar 355 Methanothermo...
Q2NEW5         251 KTGMGPEVFDSVAIPIPVLNEDILNNLKVLNKDIPLPVCDIHGRhLPIATIDY-SVWdntdyrpttnpencfecipclpe 329 Methanosphaer...
CDG64549       265 RTGAGPEVYNSVATAIPILDDEILQKTFIKNEDIILPIADVRGRhSVLSQTSY-EVWrdvderptferemcqkcstcive 343 Methanobacter...
WP_012619317   251 ITSVGPECLTSLAAPIPVLDQAALDPLLVLDAEVNLPIAGINDR-TGCAASKYSEVWqgtdhriqndpsgcvhcetcraa 329 Methanosphaer...
Q2FTG3         249 RTAAGPECITSIGTAIPVVDTDVLSSLSVLDCDIAMPVVDISDR-QPVGTASYEQVWtgtatrvlyhperclhcspcdar 327 Methanospiril...
jgi:Mpet_0281  253 KTSAGPECITSIAAAIPVIDNECIARLSVLDEEILLPIVDVFDR-RTLGFSDYGRIWqsagrhitvdptkcllcgecpaq 331 Methanolacini...
AGI85515       253 RTSEGPECLTSVASAIPITSEKGLEGVSVLDEDVYLPVADVRDR-KPLFREDYASVWkgtdhrvsidpakclgcrecqad 331 Candidatus Me...
jgi:Mzhil_0784 257 LTPSGPEIISTWAVPIPIINEKILENVIKLDKETPLKVADVGGR-IKLCETTYGDVWdnadpavtykpekcimcttckie 335 Methanosalsum...
WP_020449614   248 MTSEGPECIVSWGVPIPILNDSLLKDVRILDEQIQLPLLDVSVR-KPIAYIDYGKLWnevslsvkvhadkcrkcelcrvv 326 Candidatus Me...
WP_013720221   339 racpmravrydqearvairdgslcfhcglcvtecpngafrcrLGALRMKTSsgsvrSVpVVLRQSDRLRAVKLSGELKRR 418 Methanothrix ...
O27719         356 rcptha--------idngldldrcfgcgvcawscpsgayemdTGTVRIGEL-----AVpIICRQSDRLRARELSLELKKL 422 Methanothermo...
Q2NEW5         330 iycpvna-----fkkdktvdtdlcygcgycatvcprgvpiinTGVVSFESGdk-lrKIpVTCRQSDKKRAIEIANDLKEA 403 Methanosphaer...
CDG64549       344 ercptha------fqnqklnqvrcfgcgmcayscpfgtfqmrRGKVIMDWEgq-ekELeVCCRQSDLKRARQIAKELKKR 416 Methanobacter...
WP_012619317   330 tlcptga-----ispgavidrdrcvncgtcvqvcpgpafsgiLGAITYEGR-----QVpITLRQSDRIRGTRLCAELKER 399 Methanosphaer...
Q2FTG3         328 tacpvda-----iredgtinqtqcfvcgtcvqickgsvyegnFGSITYEGA-----GIpIVLRQSDRRRAEILCRRVRDM 397 Methanospiril...
jgi:Mpet_0281  332 ehcpada-----impgggiltsrclscgaclstcigevysmdTGSIALNGK-----EIpVVLRQSDRRKGEQICSNLKEK 401 Methanolacini...
AGI85515       332 lscprda------kpsalrrndlcmdcglctytcvggvfgadMGSVSFDGR-----TVpIGVRQSSRSAAEDLCVELKGM 400 Candidatus Me...
jgi:Mzhil_0784 336 ekcpmkavtsgdsiksatyepsecfncgfcvsicpggafnaeLGAIHCTIDnm-qrTIpVTLRQSDRLRAIRAASELKEK 414 Methanosalsum...
WP_020449614   327 nscpmsa------vsdapdinrhrcfncglcsticpdvfsadLGSVDVNIDgi-mrNIpVACRQSDRARALKISRELKSR 399 Candidatus Me...
WP_013720221   419 ILEGSFRM 426 Methanothrix soehngenii
O27719         423 IENGDFLM 430 Methanothermobacter thermautotrophicus str. Delta H
Q2NEW5         404 ILDGSFKL 411 Methanosphaera stadtmanae DSM 3091
CDG64549       417 IEKGTFLL 424 Methanobacterium sp. MB1
WP_012619317   400 IRVGTFSL 407 Methanosphaerula palustris
Q2FTG3         398 LVRGEFQI 405 Methanospirillum hungatei JF-1
jgi:Mpet_0281  402 IESGKFTL 409 Methanolacinia petrolearia DSM 11571
AGI85515       401 VENGNWKL 408 Candidatus Methanomethylophilus alvus Mx1201
jgi:Mzhil_0784 415 ILDSRFRI 422 Methanosalsum zhilinae DSM 4017
WP_020449614   400 LLDKTFVL 407 Candidatus Methanomassiliicoccus intestinalis
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