Conserved Protein Domain Family
MatK_N

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pfam01824: MatK_N 
MatK/TrnK N-terminal
Group II introns are widespread in plant cell organelles. In vivo, most plant group II introns do not self-splice, but require the assistance of proteinaceous splicing factors, known as maturases. In higher plants, maturases are encoded for in the nuclear genes, but are otherwise encoded by organellar introns. The N-terminal domain of MatK, a maturase encoded in the trnK tRNA gene intron, appears to be a divergent reverse transcriptase domain that has lost most of the conserved sequence motifs typical of functional reverse transcriptases. The function of this domain is not known, but it may be important in RNA splicing.
Statistics
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PSSM-Id: 485331
Aligned: 8 rows
Threshold Bit Score: 346.377
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P32088         1 MEEIHRYLQPDSSQ---QHNFLYPLIFQEYIYALAQDHgln---rnRSIL---LENSGYNN-KLSFLIVKRLITRMYQQN 70  potato
Q9TKS6         1 MEESRAYLELHRSR---HQDTLYPLFFRESIYGLACGH--------GSIF---VENVGYNN-KFSLLIVKRLITRMYQQT 65  soybean
Q70Y16         1 MEELRGYLEIDRPH---QQRFLYPLLFQESIYALAHNHgl-----nGSILyepMEDLGHDK-KSSSLNVKRLIIQMYQQN 71  Amborella trich...
Q76LM0         1 MEKFEGYSEKQKSR---QQYFVYPLLFQEYIYAFAHDYgl-----nGSEP---VEIVSWNNkKFSSLLVKRLIIRMYQQN 69  domesticated ba...
Q6YXN6         2 EK-----LKKNKKKliwQQRFLYPLLFQNDFYALAYNHslnkfnlkK------IENSNLNK-HFSFLTLKRLVKRIRRKR 69  Physcomitrium p...
Q0ZJ39         1 MEGVQRYFKLDRSR---QDDFLYPLIFQEYIYALSYDHgl-----nRSIL---LENVGYDN-KSSLLIVKRLITRMYQQN 68  wine grape
P56784         1 MDKFQGYLEFDGAR---QQSFLYPLFFREYIYVLAYDHglnrlnrnRYIF---LENADYDK-KYSSLITKRLILRMYEQN 73  thale cress
YP_005090159   1 MEEYQRYLELDRSR---KNNFLYPFIFREYIYTFAHDHsl-----nRSTL---LENLGYDN-KSSLLIVKRLITRMYQQN 68 
P32088        71 HFIISTNDSNKNPFLGCN----KSLYSQMISEGFACIVEIPFSIRL-ISSLssfEGKKIFKSH----NLRSIHSTFPFLE 141 potato
Q9TKS6        66 HFIIFTNDSNKNPFMGYN----NHFYSQIILEGFVVVVEILFSLQFcISSL---REFEIVKSYn---NLRSIHSIFPFFE 135 soybean
Q70Y16        72 HFIISFNDSNQNRFLGHS----RNSYFQMVSEGFAVIVEIPFSMRL-VSSL---EKGS--ESH----NFQSIHSIFPFLE 137 Amborella trich...
Q76LM0        70 FLDNSVNHPNQDRLLDYKiffySEFYSQILSEGFAIVVEIPFSLRE-LSCP---KEKEIPKFQ----NLRSIHSIFPFLE 141 domesticated ba...
Q6YXN6        70 NIEELNKNYNKIFDINYN----NYFYSKVIREGLAIILENFFLVQ---------SKKKIVKKFtewtNYQSIHTVFPFIE 136 Physcomitrium p...
Q0ZJ39        69 HLIFS--DSNQNPFFGHN----KNFYSQMISEGFGVIVEIPFSLRL-VSSL---EGKEIAKSH----NLRSIHSIFPFLE 134 wine grape
P56784        74 RLIIPTKDVNQNSFLGHT----SLFYYQMISVLFAVIVEIPFSLRL-GSSF---QGKQLKKSY----NLQSIHSIFPFLE 141 thale cress
YP_005090159  69 HLIISANDSNQNPFFKYN----KNLYYQMISEGFAVIVEIPFSLRL-VSSL---ERSEIVKSH----KLRSIHSIFPFLE 136
P32088       142 DNFAHLNYVLDILIPYPVHLEILVQTLRYWVKDASSLHLLRFFLHEYCNLNSLIT--SKKPGY-SFSKKNQRFFFFLYNS 218 potato
Q9TKS6       136 DKLIYLNHESDIRIPYPIHLEILVQILRYWIKDVSFFHLLRFFFSYYYNWNSIFT--PKKWIStFFSKSNPRFFLFLYNL 213 soybean
Q70Y16       138 DKLSYLNYVLDILIPHPIHLEILVQSLRQWIRDLPSLHLLRFFLHEHQNWNSFITtnTKKCSS-FFSRENQRLFLFLYNF 216 Amborella trich...
Q76LM0       142 DKFLHLDYLSHIEIPYPIHLEILVQLLQYRIQDVPSLHLLRFFLNYYSNWNSFIT--SMKSIL-FFQKENKRLVKFLYNS 218 domesticated ba...
Q6YXN6       137 DNFLHSNYILNTKIPSLIHPELLIRILRRRIQDASFSHLLRLIFHKNKKLVTLNI---------FSQREITKLSIFLWHS 207 Physcomitrium p...
Q0ZJ39       135 DKFPHLKYVSDILIPHPIHLEILVQALRYWVKDASSLHLLRFFLHEYHNWNSMIT--PKKSIS-IFSKRNQRFFLFLYNF 211 wine grape
P56784       142 DKLGHFNYVLDVLIPYPIHLEILVQTLRYRVKDASSLHFFRFCLYEYCNWKNFYI--KKKSIL------NPRFFLFLYNS 213 thale cress
YP_005090159 137 DKFPHLNYVSDVLIPYPIHLEKLVQILRYWVKDPSSLHLLRLFLHEYWNWNSFII--PKKSIS-IFTKSNPRFFVFLYNS 213
P32088       219 YVYECESTFVFLRNQSSHLRSTSFGALLERIYFYGKIERLVEVFAKDFQVTLWLF--KDPFMHYVRYEGKSILASKGTFP 296 potato
Q9TKS6       214 YVWEYESIFLFLRNKSSKLRLKYFRVFFERIFFYEKIEHLVEVSVKDCSYTLSFF--KDTFMHYVRYQGKSILVSKNTPL 291 soybean
Q70Y16       217 HVYQFESLFVFLRKQFFHLRSISFGSFLERTHFYGKIENFVVSMRNHSQNILWLF--KDLFMHYVRYKGKSIMASRGTYL 294 Amborella trich...
Q76LM0       219 YVSEYEFFLLFLRKQSSCLPLAYSGTFLERIHFSRKMEHFGIMYPGFSRKTLWFF--MDPLIHYVRYQGKAILASKGSFF 296 domesticated ba...
Q6YXN6       208 YIYELEFFLVNQWKTLNYFKSLSYLISLNKTYCITKIQH---VIKKPLDIKLQFFykKKMSFHYVRYENHFIIAIKNSNF 284 Physcomitrium p...
Q0ZJ39       212 HVCEYDSIFIFIRNQSYHLRSTSYGALLGRIFFYGKIEHFVEVFANDFQTILWLF--KNPFMHYVRYQGKSILASKGAPL 289 wine grape
P56784       214 HVCEYESIFFFLRKRSSHLRSTSYEVLFERIVFYGKIHHFFKVFVNNFPAILGLL--KDPFIHYVRYHGRCILATKDTPL 291 thale cress
YP_005090159 214 HVYEYESLFFFLRNQSFHLRSTFSRVLLERIFFYGKIEHFAEVFANDFQAILWLF--KDPFMHYVRYQGKSVLASKDGPL 291
P32088       297 LMNKWKFYLVNFWQCHFSMYFHTGRIHINQLSNHSRDFMG 336 potato
Q9TKS6       292 LINKWKYYFIYLWQCHFDIWSRPGTIHINQLSQHSFHFLG 331 soybean
Q70Y16       295 LMNKWKSHLVNFWQFRFYFWSQPGRIHINELSNHSFYF-P 333 Amborella trichopoda
Q76LM0       297 LKKKWKCYLINFWQYYFFFWTQPRRIHINQLANSCFDFMG 336 domesticated barley
Q6YXN6       285 LAEKWKFFFYKFWQYYFYYLFKLSRINLKKISKNCFSFLG 324 Physcomitrium patens
Q0ZJ39       290 LMNKWKYYLVNFWQCHFYVWSQPVRIHINQLSKHSLDFLG 329 wine grape
P56784       292 LMNKWKYYFVNLWQCYFSVWFQSQKVNINQLSKDNLEFLG 331 thale cress
YP_005090159 292 LMKKWKYYLVHLCQCHFYVWFQPEKIYINSLSKHSLNFLG 331
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