Conserved Protein Domain Family
YidD

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pfam01809: YidD (This model is not part of the current CDD release)
Putative membrane protein insertion efficiency factor
This family consists of membrane insertion efficiency factor proteins. They contain three conserved cysteine residues. Family members such as YidD may be involved in insertion of integral membrane proteins into the membrane by assisting YidC (membrane protein insertase). Some members of the yidD family have been previously thought to posses alpha-hemolysin activity, however no sufficient evidence was found to corroborate this idea. Secondary structure prediction indicated the presence of three alpha-helices in YidD. None of the three alpha-helices appeared sufficiently hydrophobic to serve as a transmembrane, suggesting a cytoplasmic localization for YidD. However, a closer examination of the alpha-helical wheel projection of the predicted first alpha-helix in YidD suggested an amphipathic structure in its N-terminal region which might be involved in membrane targeting.
Statistics
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PSSM-Id: 514519
Aligned: 559 rows
Threshold Bit Score: 60.8701
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013044212    18 ARVAAFGVRGYQLLLSPlkYAlfgpscGCRFQPTCSCYARESLLKYGFFRGGWMALKRILRCHPWHPGG--YDPV 90  Coraliomargarita a...
WP_011735738    64 rFVFLGAIHLYRTYVSPidGP------RCGFTPSCSAFARQAVGEYGGLRGVIMTADRLTRCNIFKKPGpdYpll 132 Pelobacter propion...
jgi:Ftrac_3264  63 qfVFSGLFLFYKSFISSqdAQ------SCSFTPSCSVYALEAVKKQGVLKGMMNGFDRLSRCNS-------LSPE 124
Q9PNX6           1 -mICLKILRFYQKFLSPlkPA------ACRYYPSCSEYALWQFQKKNFFLAFFSTFFRILRCNPFFKGG--FDYp 66  Campylobacter jeju...
WP_013023277    14 aRVPLWLIEKYQRFLSPlfPG------TCRYYPGCSEYAAWSFKNQHFLPAIWSILWRILRCNQLFLGG--IDYp 80  Helicobacter mustelae
WP_012082255     3 KKSLLVLLKIYQKVFTLlsYG------SCRYYPTCSEYAVWKLEQDNLFRALFHTTFRILRCNQLFPGG--IEYp 69  Nitratiruptor sp. ...
Q30T78           3 KAFLLKLLWLYQKFFTLigYG------SCRYYPSCSEYAKIHFENNSISSAFYHTFTRILRCNQLFEGG--IEYp 69  Sulfurimonas denit...
WP_012857164     2 RVLALFLIKLYQKFFTLigYG------SCRYYPTCSNYAKEQLLHNGFLKAIFYSFIRILKCNQLFAGG--IDYp 68  Sulfurospirillum d...
WP_013136167     2 NFVFKYLIKFYQKFISRytSP------SCRFYPTCSEYGVWQMENNSFFKAIYFTITRILKCNQLFKGG--IDYp 68  Arcobacter nitrofi...
A8EV98           2 KWLFKYLIRFYQKYLTIlsFG------SCRYYPTCSQYALWQLDNNTFFKAIYFTILRILKCNQLFDGG--FDYp 68  Aliarcobacter butz...
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