3IRB


Conserved Protein Domain Family
OB_aCoA_assoc

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pfam01796: OB_aCoA_assoc 
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DUF35 OB-fold domain, acyl-CoA-associated
The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain and a C-terminal OB fold domain represented in this entry. OB-folds are frequently found to bind nucleic acids suggesting this domain might bind to DNA or RNA (Topsan http://www.topsan.org/). Genomic context shows it to be adjacent to acyl-CoA transferase (http:/www.microbesonline.org/).
Statistics
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PSSM-Id: 426439
Aligned: 88 rows
Threshold Bit Score: 37.5819
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3IRB_A         74 YVEINKdEAYVDSYT-IIYNDD---------EGNKLAQPvyiALIRFPN---IEGGLLCYAEGNv--kVGAKAKiLSFQ 137 Saccharolobus s...
Q0RJ25         48 QVDVPT-EGEVRAFTiVAHAAP------------GVPVPfvsATVDCAGt-sVRANLVNVEPTPeavrLGMKVR-LALT 111 Frankia alni AC...
WP_011809572   66 QVLRPG-GGTLLEYV-TLHLAL----------APGLPVPgivGDIRIADr-vVQQGLIAVDDESrl-hPGMALR-ARAQ 129 Verminephrobact...
jgi:Noca_4132  56 EVVLPR-EGTIWSAT-VQHFEPkp-----pfRHDGEYVPfgmGYVDLGEv-iVVARFTENDPARl--gIGTPVA-LCAV 123 Nocardioides sp...
WP_009950913   37 GIALST-SGTLWTWT-VQRFAPkspp-fvapEG--GFEPfavGYVELPEgvrVMAVLDVPDPASl--rIGMPVR-VRVA 107 Saccharopolyspo...
WP_011906802   40 PVALSR-TGTLWSYT-IQRYRPkspp-yagpE---AFRPwpvGYVELPGeviVEARLANVAFEDi--rIGMPLE-LTLV 109 Novosphingobium...
Q0RMH6         52 EIRLPR-RGNLWTFT-TQRFRPpaskdsttaFSEENFRPftvGYIELPGflkIQTRITEADPDRl--rIGQEME-LVME 125 Frankia alni AC...
jgi:Msed_0387  58 WVKLSN-RGKLMTYT-VVKAKP---------QGYESEEDyviGIVRTDDgvdLMCWIKGTPR------VNSHVN-LVTD 118 Metallosphaera ...
Q976V9        100 WVEMPD-EGELVAYT-IINVKP---------PSFSHYQDyivGIARMKNginVTAWVNSKEVK-----VGMKVK-LRIT 161 Sulfurisphaera ...
Q4J6K1         58 WVELQG-EGELMTYS-IVSQKP---------QGFEKYPDyviGIVRLGEv-sVMAWIKGRPR------VGSKVK-ISTD 117 Sulfolobus acid...
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