4Y6X


Conserved Protein Domain Family
Ilar_coat

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pfam01787: Ilar_coat (This model is not part of the current CDD release)
Ilarvirus coat protein
This family consists of various coat proteins from the ilarviruses part of the Bromoviridae, members include apple mosaic virus and prune dwarf virus. The ilarvirus coat protein is required to initiate replication of the viral genome in host plants. Members of the Bromoviridae have a positive stand ssRNA genome with no DNA stage in there replication.
Statistics
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PSSM-Id: 514502
Aligned: 20 rows
Threshold Bit Score: 165.211
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4Y6X_C         1 MTAPI---PVVPVSRP-QAKTSLKLPNNQVw--------VTRKASEWSAKTIDTNDAIPFKTIVEGIPeiNSETKFYRLL 68  Tobacco streak ...
1_pfamImport  36 NITPAr-sGGPPVPRSiRTEWELVGPSVGArliqgphneVVKGEAVASSTTAGQYFSIQISTYLEKFL--EMGVQLNSMT 112
Q5DQQ2        43 GKNPVrghPVKGGPSVrRTSWEVRGPNVEPkip---kghRVLSSREVTAMVEGKFVNIDFADVFRDLL--EKDLKVYTFI 117 Apple mosaic virus
Q5UKX3        47 MPTAV------------RTEWEINGPNTQVrrfp--glvTVSKGVAIRSTGAGTYWGFAISTAFHNLM--GQRVLCDALV 110 Fragaria chiloe...
Q49S37        36 KQFPG-------GNSKiISEWMLHGPNVPVknfp--gmiSRTENLTVNSTASGVYYTMKVRELFKDF---AVDTKVYGIV 103 Prune dwarf virus
Q80852        51 IPVPV---PVIPVSRPnGPKASLKLPNNQVw--------VYKVASELAAKTSDANDAISLTTMLSGISdvKPETKLYRLV 119 Parietaria mott...
Q2MCM1        35 IPVPV---PVIPVSRPqGPKTSLKLPNNQVw--------VYKAAIELGAKTSDANDAISLTTMLSGISevKPETKIYRLI 103 Parietaria mott...
Q6V1W2        73 VPLPV---PVVPVSRP-QARASLKLHNNQVw--------VTRKASEWAAKATDTNDAISFRVIAEGIPgvDDETKFFRLL 140 Tobacco streak ...
Q6URI8        56 nsrPL---RVVPVPAP-TTSKSLKLPGNQVw--------VTRKPSDWAAKTVDTNDAITLKTIFNGIPeiNDDTKIFRVL 123 Strawberry necr...
Q2QF32        80 APVPL---PVVPVPQP-ATQRNLRLPNGQVw--------VTRKPTDWAAKVNDANDAMLLKTIFDGITeiKPDTKVFRVL 147 Blackberry chlo...
4Y6X_C        69 IGFVA-VSDGTFGMV--DGVTGDVIpDPPVVGRLGFKKNTYRSRDFDL-GGKLLNQL-DDRAIVWCLDERRRDAKRVQLA 143 Tobacco streak ...
1_pfamImport 113 VLCASlQGSGIVCLT--HKFTTCEA-AISTLSGLRFREGRRLGFQVLPsSDTVAGDVaSNVRLVFKFDKAFEANAPLIER 189
Q5DQQ2       118 IRVNSlSSNGWIGLV--EDYDESNPkGPNPMDRKGFKKDQPRGWQWEApPNTTFDDFvRKFRLVLEFKTNFAAGAKVFMR 195 Apple mosaic virus
Q5UKX3       111 MRFISdHSGGVVGVV--RGYNPDHPtAPNALTRRRFHKGVATGLQFLApTNQVVDEIaDDIYIVFQFDTAFTANAVLLTR 188 Fragaria chiloe...
Q49S37       104 FRYCLdASNGVYGLI--KGFNVSAPvAPNPLQRRKFTAKQASGVQILApTGMTVGDIpDDLWFVIKYDNAFQPDVPVWFC 181 Prune dwarf virus
Q80852       120 FGFVA-ESDGSFGVVedENVSGNVVpDPPVVGRAGFKKHTNKCRDVNL-EGKTPDEL-KNMAVVWCLDENRKVAKRIAFT 196 Parietaria mott...
Q2MCM1       104 FGFVA-ESDGSFGVVedENVSGSVVpDPPVVGRAGFKKHTYKCRDVNL-EGKISDEL-KNMAVVWCLDENRKAAKRIAFT 180 Parietaria mott...
Q6V1W2       141 IGFVA-VSDGTFGMV--DGVTGETIpDPPVVGRLGFKKNTYRSRDFDF-GGKTLTQL-SDRAIVWCLDENRREAKRVQLA 215 Tobacco streak ...
Q6URI8       124 IGFVA-VSDGTFGLV--DGVVGDSIpDPPIIGRLGFKKNTYRSRDFRF-DGKLTPQV-ADKAIVWCLDSNRRDAKRVRLA 198 Strawberry necr...
Q2QF32       148 IGFVA-MSDGTFGLV--DGVTGDTVpELPIIGRWSFQRDVYRSRDIGL-DGQPADQL-SEKAVVWCLNTNKRAEKRVRLA 222 Blackberry chlo...
4Y6X_C       144 GYWIAISKPAPLMPPEDFLVNQD 166 Tobacco streak virus
1_pfamImport 190 KVWVSTSRLPEIMIPANLLVPDE 212
Q5DQQ2       196 DLYVITSELPPVQIPTNALLIDE 218 Apple mosaic virus
Q5UKX3       189 DRYLQHNAVPRVEIPADVLRTEA 211 Fragaria chiloensis latent virus
Q49S37       182 TQYLQHSMPKRVEISDSVLYAER 204 Prune dwarf virus
Q80852       197 HFWFAISRPSPLMPPENILVDGN 219 Parietaria mottle virus
Q2MCM1       181 HFWFAISRPPPLMPPENIL--DD 201 Parietaria mottle virus
Q6V1W2       216 GYWLAISKPAPLMPPEDFLVNQD 238 Tobacco streak virus
Q6URI8       199 DFWIAISRPNPLMPPEEFLSGDS 221 Strawberry necrotic shock virus
Q2QF32       223 DFWVAIAKPKPLMPPPDFLVEDN 245 Blackberry chlorotic ringspot virus
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