Conserved Protein Domain Family
Ilar_coat

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pfam01787: Ilar_coat 
Ilarvirus coat protein
This family consists of various coat proteins from the ilarviruses part of the Bromoviridae, members include apple mosaic virus and prune dwarf virus. The ilarvirus coat protein is required to initiate replication of the viral genome in host plants. Members of the Bromoviridae have a positive stand ssRNA genome with no DNA stage in there replication.
Statistics
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PSSM-Id: 426433
Aligned: 20 rows
Threshold Bit Score: 191.426
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ABS19885   5 NAPQNKGKKKQNARTTQFAQRRAAAARGEIeTSSRNITPAr----sGGPPVPRSIRTEWELVGPSVGArliqgphneVVK 80  American plum line ...
Q9YKE1    12 GGCRSCKKCHPNDALVPLRAQQRAANNPNR-NPVRVSNVVg-----PVVRPKPVVKTTWTIRGPNVPPrip---kgfVAH 82  Prunus necrotic rin...
Q5DQQ2    12 GSCARCKWCCGTNRPAPLMQEVARAQA----NPNKGKNPVrg---hPVKGGPSVRRTSWEVRGPNVEPkip---kghRVL 81  Apple mosaic virus
Q5UKX3    12 PCGVVHRRGRPTQRSQNFARRGGMAPRPNTaNNLAMPTAV---------------RTEWEINGPNTQVrrfp--glvTVS 74  Fragaria chiloensis...
Q49S37     1 MSGKIIKSGKPTARSQSFALARKINNTTPPdGSVKKQFPG----------GNSKIISEWMLHGPNVPVknfp--gmiSRT 68  Prune dwarf virus
Q83069     6 VRVLPRGVGKPTQRSRNFAAQRQRSNAMQAtQPMIGSIPValgyslPV----QFPGSEWH-----------------KIS 64  Lilac ring mottle v...
O57165    22 PSRGRGRGRGPTARSRNWAQSRANAARSRPqTLVIGTMPT------NLPTWKSFPGEQWH-----------------VVS 78  Spinach latent virus
Q65299    21 PTRGRGGRRQPTARSRQWAQGQANARRSQPqALMIGSVPT------SLPTWKSFPGEQWH-----------------EVS 77  Asparagus virus 2
Q8V320    21 PTRGRGGRRQPTARSRQWAQGLANVRRSQPqQLLVGSMPT------NLPTWKSFPGEQWH-----------------EVS 77  Citrus variegation ...
Q66106    22 PVANARGRRRPTNRSRNWAQGQ----RSQPqRMVVGSMPI------DTITWKSFPGEQWH-----------------EFS 74  Citrus leaf rugose ...
ABS19885  81 GEAVASSTTAGQYFSIQISTYLEKFL---EMGVQLNSMTVLCASlQGSGIVCLTHKFTTCEA-AISTLSGLRFREGRRLG 156 American plum line ...
Q9YKE1    83 SHREVTTTEAVKYLSVDFTTTFPQLM---GQNLTLLTIINRMNSmSSNGWIGIVEDYRVINPeGPNALSRKGFLKDQPRG 159 Prunus necrotic rin...
Q5DQQ2    82 SSREVTAMVEGKFVNIDFADVFRDLL---EKDLKVYTFIIRVNSlSSNGWIGLVEDYDESNPkGPNPMDRKGFKKDQPRG 158 Apple mosaic virus
Q5UKX3    75 KGVAIRSTGAGTYWGFAISTAFHNLM---GQRVLCDALVMRFISdHSGGVVGVVRGYNPDHPtAPNALTRRRFHKGVATG 151 Fragaria chiloensis...
Q49S37    69 ENLTVNSTASGVYYTMKVRELFKDF----AVDTKVYGIVFRYCLdASNGVYGLIKGFNVSAPvAPNPLQRRKFTAKQASG 144 Prune dwarf virus
Q83069    65 GYSFGSTSTNYVY-YQTFEAELKKFPdliHANTVVYSVLIGFTV-KADGYPGFDEAFDSTALkEPEAPNRHRFLSSKYCG 142 Lilac ring mottle v...
O57165    79 GFSFPDRWNNGNIAYASMKTELGKIKt-lHEITKVYSVMYGFIC-KSDGHAGFITGFDTNNPtGPVAPDRVKVKKNAYCA 156 Spinach latent virus
Q65299    78 GYSFPNSWGSGTLAWLTMANELNKIKt-lHDTTKVYSVMLGFTC-NYDGYAGFVEGFSTSNQiHPIAPDRIRVKKGKYGA 155 Asparagus virus 2
Q8V320    78 GYSFPDRWGSGTIAYMTLRSELSKIRt-lHDTTKVYSVMIGFVC-KSDGYAGFMDGFDINNAtGPVAPDRIRVKRGKYCA 155 Citrus variegation ...
Q66106    75 GFSFPDAWGSAKIAYASMRTELGKIKs-lHHTTKVYSVMYGFTC-KADGYAGFMDNFDSANAtGPVAPNRIRVKAAKYCA 152 Citrus leaf rugose ...
ABS19885 157 FQVLPSSDTVAGDVASNVRLVFKFDKA----FEANAPLIERKVWVSTSRLPEIMIPANLLVPDE 216 American plum line pattern virus
Q9YKE1   160 WQFEPPSDLDFDTFARTHRIVIEFKTE----VPAGAKVLVRDLYVVVSDLPRVQIPTDVLLVDE 219 Prunus necrotic ringspot virus
Q5DQQ2   159 WQWEAPPNTTFDDFVRKFRLVLEFKTN----FAAGAKVFMRDLYVITSELPPVQIPTNALLIDE 218 Apple mosaic virus
Q5UKX3   152 LQFLAPTNQVVDEIADDIYIVFQFDTA----FTANAVLLTRDRYLQHNAVPRVEIPADVLRTEA 211 Fragaria chiloensis latent virus
Q49S37   145 VQILAPTGMTVGDIPDDLWFVIKYDNA----FQPDVPVWFCTQYLQHSMPKRVEISDSVLYAER 204 Prune dwarf virus
Q83069   143 LEKVFPAGTVASDLNGSHAILWVIDAAfpstMNANSGIKVHSIWWQTAKLPPMKPPQNFLQCEK 206 Lilac ring mottle virus
O57165   157 KQQVFPAGTTVSELKNDWSFIWEFDAAp--vVGTEKQVTVTQFWVSTTPLPGVKPPSNFLVCED 218 Spinach latent virus
Q65299   156 RQQVFPTGTTVSEVRSNWTFVWNFDAAp--pTGSKDAITVTKFYIATSPLPGVKPPSNFLVVEE 217 Asparagus virus 2
Q8V320   156 KQQVFPTGTTVSEVKANWNLVWDFDTAp--aTGAVHEISITKFYVSTTPLPGVKPPSNFLVVEE 217 Citrus variegation virus
Q66106   153 RQLVLPPGSTVADLRDNYNFVWEFDAAp--aAGTANIISVTKFYVSTVPLPGIKPPPNFLVCEM 214 Citrus leaf rugose virus
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