2QGG


Conserved Protein Domain Family
RimM

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pfam01782: RimM 
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RimM N-terminal domain
The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes. This N-terminal domain is found associated with a PRC-barrel domain.
Statistics
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PSSM-Id: 460327
Aligned: 106 rows
Threshold Bit Score: 52.9466
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2QGG_A  13 QIGQLRSAYGLNGWLWVYSNTEPXSNXFDYLPWYIE----TKAGWQTVDVKRwkPHGKGLVVSLKGVSDRTGAESLVASN 88  Acinetobacter calcoac...
A4J666   7 TVGKVVNTQGIQGEVRIIPTTDFPE-RFVKNDKISVl--lRGQRRD-YTIERvwEHKQFIIIKFSEIPDMTAAEKLKGGL 82  Desulforamulus reduce...
A8MHC3   6 RVGKITNTHGIKGDLKVLPLTDYFE-RFEELEWVYI----EGFKDK-FYIENikYKPTLVILSFEGYGDINLVEKFKDRY 79  Alkaliphilus oremland...
Q18BB6   9 KVGQIVNTQGLKGEVRVYPLTDDIE-RFDELKDFYLgk-dLNNK---LAVEKvrYKGSMVIMKIKGIDSIEKAEKLKNKF 83  Clostridioides diffic...
B8I7T4   6 IVGQLINTHGVKGELKATSQTDDPQ-RFKKLKWVYId--kNGSLEK-YDINGvkFFKQFIIIKFQGVDSIEEAEKLKGFY 81  Ruminiclostridium cel...
A3DDH3   6 QVGKIVNTHGIKGEVKAIPLTDNPR-RFNKLKWAYVskeiSNEMPK-FDIVSvkHHKNFVILKFSGIDDMNAAEKLKEHF 83  Acetivibrio thermocel...
Q0AWV6   8 AIGKIAGTYGYAGWLKVIPLTDFPE-RFYKLDKVILn---QGGKLGTFLVDGlkAHNNFYLFKFSGIDTVEVAQGFQNGI 83  Syntrophomonas wolfei...
Q04FP6   5 RIGRVINTHGIAGELKIDFNTDFPEQRFAKNSELLI----AGEK---LVVQSsrPFKQFWLVKFSDHENINLVEKYKGED 77  Oenococcus oeni PSU-1
Q1G9L3   5 nVGKIIATHGLKGEVKVALTTDFPEDRFRAGSRLYL-----GDDSREVTVAAgrPFKQFWLVTFAEITDIDQAEKLKGTE 79  Lactobacillus delbrue...
Q74IQ5   6 EVGKILSPHGLKGEVKVNATTDFPEERLATGSRLFIk--nNKQYEE-LIVENtrRHKQFYLVKFEKIDDIDQAEKICSKE 82  Lactobacillus johnson...
2QGG_A  89 IWIAKSQ 95  Acinetobacter calcoaceticus
A4J666  83 LQVTMEE 89  Desulforamulus reducens MI-1
A8MHC3  80 LLIDESQ 86  Alkaliphilus oremlandii OhILAs
Q18BB6  84 MYVSRED 90  Clostridioides difficile 630
B8I7T4  82 IKVDRAN 88  Ruminiclostridium cellulolyticum H10
A3DDH3  84 VIIDRKD 90  Acetivibrio thermocellus ATCC 27405
Q0AWV6  84 LQIDESE 90  Syntrophomonas wolfei subsp. wolfei str. Goettingen G311
Q04FP6  78 IFINERK 84  Oenococcus oeni PSU-1
Q1G9L3  80 ILISEED 86  Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002
Q74IQ5  83 LYVAETD 89  Lactobacillus johnsonii NCC 533
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