2QGG


Conserved Protein Domain Family
RimM

?
pfam01782: RimM (This model is not part of the current CDD release)
RimM N-terminal domain
The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes. This N-terminal domain is found associated with a PRC-barrel domain.
Statistics
?
PSSM-Id: 514498
Aligned: 97 rows
Threshold Bit Score: 53.7228
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
2QGG_A  13 QIGQLRSAYGLNGWLWVYSNTEPXSNXFDYLPWYIE---TKAG-WQTVDVKRw-kPH--GKGLVVSLKGVSDRTGAESLV 85  Acinetobacter calcoac...
Q04FP6   5 RIGRVINTHGIAGELKIDFNTDFPEQRFAKNSELLI----AGEk---LVVQSs-rPF--KQFWLVKFSDHENINLVEKYK 74  Oenococcus oeni PSU-1
Q1G9L3   5 nVGKIIATHGLKGEVKVALTTDFPEDRFRAGSRLYL-----GDdSREVTVAAg-rPF--KQFWLVTFAEITDIDQAEKLK 76  Lactobacillus delbrue...
Q6MTI2   7 KIGVIVNTFSIKGQVKVILNSDIVIDDLNKINTFFI---ETNDn---FQVLRiqeINlnKNYLIVKFLNLNNINDVIKFK 80  Mycoplasma mycoides s...
A4J666   7 TVGKVVNTQGIQGEVRIIPTTDFPE-RFVKNDKISVl--LRGQrRD-YTIERv-wEH--KQFIIIKFSEIPDMTAAEKLK 79  Desulforamulus reduce...
A8MHC3   6 RVGKITNTHGIKGDLKVLPLTDYFE-RFEELEWVYI----EGFkDK-FYIENi-kYK--PTLVILSFEGYGDINLVEKFK 76  Alkaliphilus oremland...
A3DDH3   6 QVGKIVNTHGIKGEVKAIPLTDNPR-RFNKLKWAYVskeISNEmPK-FDIVSv-kHH--KNFVILKFSGIDDMNAAEKLK 80  Acetivibrio thermocel...
Q18BB6   9 KVGQIVNTQGLKGEVRVYPLTDDIE-RFDELKDFYLg-kDLNNk---LAVEKv-rYK--GSMVIMKIKGIDSIEKAEKLK 80  Clostridioides diffic...
B8I7T4   6 IVGQLINTHGVKGELKATSQTDDPQ-RFKKLKWVYId--KNGSlEK-YDINGv-kFF--KQFIIIKFQGVDSIEEAEKLK 78  Ruminiclostridium cel...
Q0AWV6   8 AIGKIAGTYGYAGWLKVIPLTDFPE-RFYKLDKVIL---NQGGkLGTFLVDGl-kAH--NNFYLFKFSGIDTVEVAQGFQ 80  Syntrophomonas wolfei...
2QGG_A  86 ASNIWIAKSQ 95  Acinetobacter calcoaceticus
Q04FP6  75 GEDIFINERK 84  Oenococcus oeni PSU-1
Q1G9L3  77 GTEILISEED 86  Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002
Q6MTI2  81 NKEIYCLKNQ 90  Mycoplasma mycoides subsp. mycoides SC
A4J666  80 GGLLQVTMEE 89  Desulforamulus reducens MI-1
A8MHC3  77 DRYLLIDESQ 86  Alkaliphilus oremlandii OhILAs
A3DDH3  81 EHFVIIDRKD 90  Acetivibrio thermocellus ATCC 27405
Q18BB6  81 NKFMYVSRED 90  Clostridioides difficile 630
B8I7T4  79 GFYIKVDRAN 88  Ruminiclostridium cellulolyticum H10
Q0AWV6  81 NGILQIDESE 90  Syntrophomonas wolfei subsp. wolfei str. Goettingen G311
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap