Conserved Protein Domain Family
Rota_NSP3

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pfam01665: Rota_NSP3 
Rotavirus non-structural protein NSP3
This family consist of rotaviral non-structural RNA binding protein 34 (NS34 or NSP3). The NSP3 protein has been shown to bind viral RNA. The NSP3 protein consists of 3 conserved functional domains; a basic region which binds ssRNA, a region containing heptapeptide repeats mediating oligomerisation and a leucine zipper motif. NSP3 may play a central role in replication and assembly of genomic RNA structures. Rotaviruses have a dsRNA genome and are a major cause cause of acute gastroenteritis in the young of many species. The rotavirus non-structural protein NSP3 is a sequence-specific RNA binding protein that binds the nonpolyadenylated 3' end of the rotavirus mRNAs. NSP3 also interacts with the translation initiation factor eIF4GI and competes with the poly(A) binding protein.
Statistics
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PSSM-Id: 279933
Aligned: 2 rows
Threshold Bit Score: 432.683
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9PY95   1 MATQASVEWIFNVAGSAASSSLDKAIKDAGGSENFSKyVITKFYDNYKDCIDDSGVYNACIGRAKTIDKALNDP-KVAER 79  Human rotavirus C/Bri...
A2T3N5   5 ESTQQMAVSIINSSFEAAVVAATSALENMGIEYDYQD-IYSRVKNKFDFVMDDSGVKNNLIGKAITIDQALNNKfGSAIR 83  Simian rotavirus A/SA...
Q9PY95  80 NEEWYTNVATISRLDLELAELKLMLSNLGIKREERVLNSMFSVVREKGRSSNVIMMKQNAVKMIEEGKLKIK----VERN 155 Human rotavirus C/Bri...
A2T3N5  84 NRNWLADTSRAAKLDEDVNKLRMMLSSKGIDQKMRVLNACFSVKRIPGKSSSIIKCTKLMRDKLERGEVEVDdsfvDEKM 163 Simian rotavirus A/SA...
Q9PY95 156 ETYTESLKNKIEELECIIDAF-----EKGKDITIDLDAMNGEVKLDGNSCSYNSTAAlvstilgTPIKMYNESGQPLFD- 229 Human rotavirus C/Bri...
A2T3N5 164 EVDTIDWKSRYEQLEQRFESLksrvnEKYNNWVLKARKMNENMHSLQNVISQQQAHI-------AELQVYNNKLERDLQn 236 Simian rotavirus A/SA...
Q9PY95 230 -VGNYMNPKNIIEKMIELEiPIFKSDYrnnespdfdswnERSNLKIVSVNDCHAicifkfennwwcFDDGR 299 Human rotavirus C/Bristol
A2T3N5 237 kIGSLTSSIEWYLRSMELD-PEIKADI------------EQQINSIDAINPLHA------------FDDLE 282 Simian rotavirus A/SA11-H96
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