Conserved Protein Domain Family
Basic

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pfam01586: Basic (This model is not part of the current CDD release)
Myogenic Basic domain
This basic domain is found in the MyoD family of muscle specific proteins that control muscle development. The bHLH region of the MyoD family includes the basic domain and the Helix-loop-helix (HLH) motif. The bHLH region mediates specific DNA binding. With 12 residues of the basic domain involved in DNA binding. The basic domain forms an extended alpha helix in the structure.
Statistics
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PSSM-Id: 514367
Aligned: 28 rows
Threshold Bit Score: 86.7438
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_003221172   3 MDLFETGSYFF----YL-DGENGALQQLDVAgegspLYpGSEGTlS-PSSCQdplgaeagigegggrgsEgsspAGEAHV 76 
XP_007228164  14 DDFYDDPCFNTndmhFFeDLD-PRLVHVS-------LLkPDEhg-----------------------------hAEDEHV 56 
XP_005814488  73 DDFYDDPCFNTtdmhFFeDLD-PRLVHGV-------PLkPEDSFsPsSSLSSsspspcshlhhqlqhpeAe----dDEHV 140
XP_005449194  14 DDFYDDPCFNTsdmhFFeDLD-PRLVHVG-------LLkPDDSSsSsSSSPSssssspssllhlhhhaeVe----dDEHV 81 
XP_003214790  25 EDFYDDPCFNTsdmhFFeDLD-PRLVHVGG------LLkPEEphhhg------------------gpgeA------DEHI 73 
P16075        21 DDFYDDPCFNTsdmhFFeDLD-PRLVHVGG------LLkPEEhphtr-----------------apprePt----eEEHV 72  chicken
ELW70531      46 EYFYDGSCIPSpqgeFGdEFE-PRVAAFATRka--eLQgSDE----------------------------------DEHV 88 
Q8QG50        13 EFFYDSSCIPSpeegYTeDYE-HGMSLYGAHkk--dLQeSDE----------------------------------DEHV 55  tropical clawed...
Q08856        13 ELFYDSSCLSSpegeFPeDFEPRELPPFG-------APaPTE---PaCPE-------------------------EEEHV 57  chicken
NP_001035151  13 DDLYDDPCFSSgdlnFFdDLD-SRL-----------LLkPEGhqhlhhh-------------vpsaeeeLeeetVVEEHV 67  torafugu
XP_003221172  77 LAPPclqaPHGPGQCLVWACKTCKRKSAPTD 107
XP_007228164  57 RAPSg---HHQAGRCLLWACKACKRKTTNAD 84 
XP_005814488 141 RVPSg---HHQAGRCLLWACKACKRKTTNAD 168
XP_005449194  82 RAPSg---HHQAGRCLLWACKACKRKTTNAD 109
XP_003214790  74 RAPSg---HHAAWRCLLWACKACKRKTTNAD 101
P16075        73 RAPSg---HHQAGRCLLWACKACKRKTTNAD 100 chicken
ELW70531      89 RAPTg---HHQAGHCLMWACKACKRKSTTMD 116
Q8QG50        56 RAPIg---HHQAGNCLMWACKACKRKSSTMD 83  tropical clawed frog
Q08856        58 RAPSg---HHQAGHCLMWACKACKRKSTTMD 85  chicken
NP_001035151  68 RAPGg---LHQAGRCLLWACKACKRKTTHAD 95  torafugu
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