Conserved Protein Domain Family
Peptidase_S30

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pfam01577: Peptidase_S30 
Potyvirus P1 protease
The potyviridae family positive stand RNA viruses with genome encoding a polyprotein. members include zucchini yellow mosaic virus, and turnip mosaic viruses which cause considerable losses of crops worldwide. This family consists of a C terminus region from various plant potyvirus P1 proteins (found at the N terminus of the polyprotein). The C terminus of P1 is a serine-type protease responsible for autocatalytic cleavage between P1 and the helper component protease pfam00851. The entire P1 protein may be involved in virus-host interactions.
Statistics
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PSSM-Id: 484999
Aligned: 26 rows
Threshold Bit Score: 191.777
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P31999  179 AQMEVDKAEQDLAFAclnasLKPRLEGRTTATIARRRDGCLVYKTKPSWSQRRRAKKTlkvdTLACENPYIPAIVDKISI 258  Lettuce mosaic viru...
O11436   13 QVDGTWVPRVFEEKEmarllAEKQHARVMRATQEMMKAPNPFAEFDEMHQRGNPFAGR----VRKCETREPKSAQKPIVT 88   Ryegrass mosaic vir...
Q82933    2 AGEWNTVVGKRNQR--------KTEEQRIFDAQKRFYETHQVYDAQRALLHNSRILKR----NFELTNAIEKPKNDPKPI 69   Johnsongrass mosaic...
O73463    2 AGTWTHVTHKWQP-------NLDN-PRDVRRIMELFAAKGQVYDEKRALEHNSKLLRR-----AQVVDVEPMITVQPKKC 68   Maize dwarf mosaic ...
P90213  300 HKEHAKIEAIRVRKEkerdqRIFAALEAKLNLGTRRKGQIVVCDKRGTLKWEKCQQRK----KSKVVAQVSDSVVTKIHG 375  Papaya ringspot virus
Q01901  300 HKEHAKIAAIQVQKErekdqKVFSALELRLNLKSRRRNQAVVCDKRGTLKWETQRGHK----KSKLMQQASDFVVTQIHC 375  Papaya ringspot vir...
Q85074  144 AALQLAVAKATIAREekikqAALSKFDKNSQVKHTGLKDNTNVKTESDGGWIQATPKHcv-kVKQNSSITTAEKTVLIPH 222  Pea seed-borne mosa...
P29152  143 ARLQAAVAKSTIEREekerqFAFSKLEEKLRARREKLKDGIVIKTRKGLEWREATPNQqr-gKLQSTSFDASGGKTLTPH 221  Pea seed-borne mosa...
Q02963   41 ASLEMQLSARLRRQE-----FATIRTSKNGTCMYRYKTDAQIARIQKKREEREREEYN-----FQMAASSVVSKITIAGG 110  Potato virus Y stra...
O39734  410 TQQAAAEKEKLVWKKldeqlATRNEIRKDLKVKWRWGLYRLVKKTRKDNQRQRRQRRMe--kEQQLLMAMPPQALTGISI 487  Sweet potato feathe...
P31999  259 AGGSSASVMHEQQKpKTLHTTPSRKVATHYKRTVMNQQtLMAFINQVGTILLNAEKEFEVVGCRKQ-KVTGKGTRHNGVR 337  Lettuce mosaic viru...
O11436   89 VDTVPVAIYTDVIWpENGKVHALSRRRAPRKHARRSKIlACDLLTQVLNISRRAGKSVEVIGKRR---CCLKPRRRDGKS 165  Ryegrass mosaic vir...
Q82933   70 KKVFKQVWVAKVKEiLNEPKPIDIKPVQARDEVVKVD--IGKFARVLLDQCKAYKVPVEIVGRKRKvVSRIQPYLKHGKT 147  Johnsongrass mosaic...
O73463   69 AQIWKEVVDHNPTHhFVYARFSEVKKQQPTKPVATSVN---KLVRKTLEIRENFPVNVEFIGKKRKnTTRVSLRKVFNKT 145  Maize dwarf mosaic ...
P90213  376 NFECETRDLDVAIPgIKCATSKKMWKKQKSSKLRGSNK-INYVMKNLCEIIVDRNVPVELITK----RCRRSIFRKDGKN 450  Papaya ringspot virus
Q01901  376 DFGCKTQYSEPHIPgIKQSTSKKICKPRKHSRIVGNSK-INYIMKNLCDTIIERGIPVELVTK----RCKRRILQKEGRS 450  Papaya ringspot vir...
Q85074  223 IAHCKTAPNKFSLGgKKCATSKKMRIVWKPRNIKMKAEsIDALIDQVVTCAGKHAKQVFLIDKQK--ANKVWVKRVNDIR 300  Pea seed-borne mosa...
P29152  222 TIYCKTKSSKFSNGgVKCATSKKMRTVRKPQSLKMKTEsIDVLIEQVMTIAGKHAKQVTLIDKQK--TNRVWIRRVNGVR 299  Pea seed-borne mosa...
Q02963  111 EPPSKLES-QVRKG--VIHTTPRMRTAKTYRTPKLTEGqMNHLIKQVKQIMSTKGGSVQLISK-K--STHVHYKEVLGSH 184  Potato virus Y stra...
O39734  488 AGGPSASLEMTPTPnGKISCTPSMKKKKTLKSPRLTQEkIHELTQAVLKIACRKRMNIELVDKKS---TKGQYKKFQGAN 564  Sweet potato feathe...
P31999  338 LVKLKTAHEEGHRRRVDIRIPNGLRPIVMRISARGGWHRTWTDSELsPGSSGYVLNSSKIIGkFGLRRHSIFVVRGRVDG 417  Lettuce mosaic viru...
O11436  166 CFGVITKHHKGVLSSRDMVKDLFVDSIIEHIAYTGHTPLIDAADIK-PGDSGLIYREKKDGY-------VTRVVRGRHDG 237  Ryegrass mosaic vir...
Q82933  148 FLKLETNHEQGRITRRDLSMPDPVKKLVLKIADKYEEPTDEDLETFsKGSSGITFKSETG---------MLFVIRGRVNG 218  Johnsongrass mosaic...
O73463  146 FLHCGTRHENNQFKRVDTNITRDWIPVLSSVAKCYATLSSNMMHNIhKGHSGLTFIQN----------GELFIVRGRLRG 215  Maize dwarf mosaic ...
P90213  451 YVQLR--HMSGGNAPRDVSSSPEMEKLFTRFCKFLIRRQSVKAARLtHGSSGLIFRPKFADR-IGRYFGEYFITRGRYAG 527  Papaya ringspot virus
Q01901  451 YVQLR--HMNGIRARQDVSSSPDMELLFTQFCKFLVGHKPLKSKNLtFGSSGLIFKPKFADN-VGRYFGDYFVVRGRLGG 527  Papaya ringspot vir...
Q85074  301 LLQVETKHHRGKISQRDVLLNDLTKRVARYFASKTTHVHPSSSITH--GHSGVVFLRENIDGnKSYSSDDLFVVRGKRNG 378  Pea seed-borne mosa...
P29152  300 LLQVETKHHKGIISQKDASLNNLTKRVARHFARKTAYIHPSDSITH--GHSGVVFLRANISGsKSYSIDDLFVVRGKRNG 377  Pea seed-borne mosa...
Q02963  185 RAVVCTAHMRGLRKRVDFRCDKWTVVRLQHLARTDKWTNQVRATDLrKGDSGVILSNTNLKGhFGRSSEGLFIVRGSHEG 264  Potato virus Y stra...
O39734  565 YLFLHLKHMEGLRESVDLRIHTTTQNLVLQAAKVGAWKRTVKTTMLsKGSSGLVLNPDKLLGpRGHAPHGMLVVRGALRG 644  Sweet potato feathe...
P31999  418 EVIDSQSKVTHSITHRMVQ 436  Lettuce mosaic virus (strain 0 / French isolate)
O11436  238 DIIDARDYVRAG-IHTIKH 255  Ryegrass mosaic virus isolate Danish
Q82933  219 VLVNALDQYEED-VKQICH 236  Johnsongrass mosaic virus
O73463  216 ELCNSLDCTKE--VQEIEH 232  Maize dwarf mosaic virus
P90213  528 KLFDGRSKLARSVRMNMEQ 546  Papaya ringspot virus
Q01901  528 KLFDGRSKLARSVYAKMDQ 546  Papaya ringspot virus (strain P / mutant HA)
Q85074  379 KLMEGRNKVAWHKMFQIDH 397  Pea seed-borne mosaic virus
P29152  378 KLMESRNKVAWRKMFQIDH 396  Pea seed-borne mosaic virus (strain DPD1)
Q02963  265 KIYDARSKVTQGVMDSMVQ 283  Potato virus Y strain Hungarian
O39734  645 VLYDARMKLGRSVLPYIIQ 663  Sweet potato feathery mottle virus
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