2JIR,2KI8


Conserved Protein Domain Family
Molydop_binding

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pfam01568: Molydop_binding 
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Molydopterin dinucleotide binding domain
This domain is found in various molybdopterin - containing oxidoreductases and tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where the domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor. This domain corresponds to the C-terminal domain IV in dimethyl sulfoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules.
Statistics
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PSSM-Id: 426328
Aligned: 72 rows
Threshold Bit Score: 65.3723
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2JIR_A 611 LYLTSMR-VIDHWHtATMTGKVPELQKANPiAFVEINEEDAARTGIKHGDSVIVETRRD----AMELPARVSDV-CRPGL 684 Desulfovibrio desulfu...
Q5YVJ8 592 LKLIGRR-HLRSNNsWLHNLPSMVKGKDRC--TALMHPRDAQARGLVDGEQVEVTSSTG----SIVVTLEVSDE-IRPGA 663 Nocardia farcinica
Q87XL6 606 LLLIGRR-HVRSNNsWMHNYHRLVKGKPRH--QLLMHPDDLSHRGLSDGQQVRVSSRVG----VIEVEVLGSLD-MMPGV 677 Pseudomonas syringae ...
Q67P16 711 LWLVPVD-RLYAGGsTARFDSEFNHVQPRP--VALLNPADAARLGLSRGDMVELAAGEA----KLALPVEISKR-VVAGT 782 Symbiobacterium therm...
Q63SW4 638 FVLMAGE-RRAYNAnQIYRDPTWRKVDPHG--SLRIHPDDAAALGVADGGKLVCASATG----SIEVVAELDDS-VRRGM 709 Burkholderia pseudoma...
Q7NJF0 643 LVLVTVR-SYSQHNtVVYKAGDTYRGMPHR-NCILMHPEDAAAAGFAEHERVTVTGKVG----QKEQVEIIFGA-PKRGA 715 Gloeobacter violaceus
Q8YXZ5 641 LILGTGR-SYGQHNtVVYRSEDKYRGMPHR-LCILMNYFDVKKAGLQEHQRVTVKGDKG----KLDNIEIICGA-ILEGV 713 Nostoc sp. PCC 7120
Q7UMT4 623 LRLMTVR-SEGQFNtVVYEEEDLYRNQDRR-DIILMNPDDLQRLGLTHDQRVTVENEIG----SMPGILARGYEkIRPGN 696 Pirellula sp.
Q0K1F2 641 LRLVTIR-SHDQYNtTIYAMDDRYRGVFGRrDVLFMNPADLAARGLEHGDLVDIETIAAgrqlRFEKITAIEYE-IAPGS 718 Cupriavidus necator H16
Q5YWD3 753 MLLDNGRmQDGEPNlAGIARPA----------VARLSAATAAEIGAADGDLVEVASERG----VLTLPLAVTP--MPDRV 816 Nocardia farcinica
2JIR_A 685 IAVPFFDPK---------------KLVNKLF-LDATDPVSREPEY-KIC-A 717 Desulfovibrio desulfuricans
Q5YVJ8 664 VAVPHGWGHrepgvgwsvaaslpgANVNLLPdPALTDRFSGNSAV-NNT-W 712 Nocardia farcinica
Q87XL6 678 VSLPHGWGHsrsgvkmeiarnqpgVSANDLTdERQLDELSGNAAL-NGV-P 726 Pseudomonas syringae pv. tomato
Q67P16 783 VQAIRGLTA---------------APVNLLT--AGAAPVAVTVA--KLAvE 814 Symbiobacterium thermophilum
Q63SW4 710 VTLPHGYGMrykgg------ppvgPELNRLTsGAHCDPLSRTPYH-KYV-P 752 Burkholderia pseudomallei
Q7NJF0 716 ALMFYPE-------------------INDII-RPPVDLRCGIPAF-KRN-P 744 Gloeobacter violaceus
Q8YXZ5 714 AFMFYPE-------------------ANVLF-KAKIDPQSGTPAY-KRV-P 742 Nostoc sp. PCC 7120
Q7UMT4 697 ALMYYPE-------------------SNVLV-ARYADPQSKTPAF-KGV-V 725 Pirellula sp.
Q0K1F2 719 VAAYYPE-------------------ANRLVpLDYIDEDSGTPSY-KSV-P 748 Cupriavidus necator H16
Q5YWD3 817 VWVPLNSPGcavp-------arlaTPAGAVVrIRRAGPAPQTGPVaAVVaA 860 Nocardia farcinica
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