8JLX,5LJY


Conserved Protein Domain Family
Hanta_Gc_N

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pfam01561: Hanta_Gc_N 
Hantavirus glycoprotein Gc, N-terminal
The medium (M) genome segment of hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins Gn and Gc (also known as G1 and G2, respectively) as a polyprotein precursor. Gn and Gc forms homotetramers at the surface of the virion, which attach the virion to host cell receptors including integrin beta3/ITGB3 and induce internalisation, predominantly through clathrin-dependent endocytosis. Gc protein has a typical class II fusion protein fold consisting of a central beta-sandwich domain (termed domain I) made of eight beta-strands arranged in two antiparallel beta-sheets, domain II which has an elongated shape with two subdomains (central, opened beta-barrel proximal to domain I and a distal beta-sandwich 'tip') and and domain III, which has an Ig-like fold. This entry represents the N-terminal region of Gc containing the central and dimerization domains (which includes domain I and II). This region has a conserved CNP motif, suggested to be an integrin-binding motif.
Statistics
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PSSM-Id: 484988
Aligned: 4 rows
Threshold Bit Score: 553.935
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
8JLX_A   34 STANIALSWSSVEHRGNKILVSGRSESIMKLEERTGISWDLGVEDASESKLLTVSVMDLSQMYSPVFEYLSGDRQVGEWP 113  Orthonairovirus hae...
P08668  649 SETPLTPVWNDNAHGVGSVPMHTDLELDFSLTSSSKYTYRRKLTNPLEEAQSIDLHIEIEEQTIGVDVHALGHWFDGRLN 728  Hantaan virus 76-118
Q8JSZ3 1082 STANIALSWSSVEHRGNKILVSGRSESIMKLEERTGISWDLGVEDASESKLLTVSVMDLSQMYSPVFEYLSGDRQVGEWP 1161 Crimean-Congo hemor...
5LJY_A    1 SETPLTPVWNDNAHGVGSVPMHTDLELDFSLTSSSKYTYRRKLTNPLEEAQSIDLHIEIEEQTIGVDVHALGHWFDGRLN 80   Hantaan virus 76-118
8JLX_A  114 KAT---CTGDCPE-RCGCTSSTCLH-KEWPHSRNWRCNPTWCWGVGTGCTCCGLDVKDLftDYMFVKWKVEYIKTEAIVC 188  Orthonairovirus hae...
P08668  729 LKTsfhCYGACTKyEYPWHTAKCHYeRDYQYETSWGCNPSDCPGVGTGCTACGLYLDQL--KPVGSAYKIITIRYSRRVC 806  Hantaan virus 76-118
Q8JSZ3 1162 KAT---CTGDCPE-RCGCTSSTCLH-KEWPHSRNWRCNPTWCWGVGTGCTCCGLDVKDLftDYMFVKWKVEYIKTEAIVC 1236 Crimean-Congo hemor...
5LJY_A   81 LKTsfhCYGACTKyEYPWHTAKCHYeRDYQYETSWGCNPSDCPGVGTGCTACGLYLDQL--KPVGSAYKIITIRYSRRVC 158  Hantaan virus 76-118
8JLX_A  189 VELtSQERQCSLIEAGTRFNLGPVTITLSEPRNIQQKlPPEIITLHPRIEEGFFdlmhvqkvlsASTVCKlQSCTHGVPG 268  Orthonairovirus hae...
P08668  807 VQF-GEENLCKIIDMNDCFVSRHVKVCIIGTVSKFSQ-GDTLLFFGPLEGGGLI----------FKHWCT-STCQFGDPG 873  Hantaan virus 76-118
Q8JSZ3 1237 VELtSQERQCSLIEAGTRFNLGPVTITLSEPRNIQQKlPPEIITLHPRIEEGFFdlmhvqkvlsASTVCKlQSCTHGVPG 1316 Crimean-Congo hemor...
5LJY_A  159 VQF-GEENLCKIIDMNDCFVSRHVKVCIIGTVSKFSQ-GDTLLFFGPLEGGGLI----------FKHWCT-STCQFGDPG 225  Hantaan virus 76-118
8JLX_A  269 DLQVYHIGNLLKGDKVNghLIHKIEPHFNTSWMSWDGCDLDYY----CNMGDWPSCTYTGVT-QHNHASFVNLLNIETDY 343  Orthonairovirus hae...
P08668  874 DIMSPRDKGFLCPEFPG--SFRKKCNFATTPICEYDGNMVSGYkkvmATIDSFQSFNTSTMHfTDERIEWKDPDGMLRDH 951  Hantaan virus 76-118
Q8JSZ3 1317 DLQVYHIGNLLKGDKVNghLIHKIEPHFNTSWMSWDGCDLDYY----CNMGDWPSCTYTGVT-QHNHASFVNLLNIETDY 1391 Crimean-Congo hemor...
5LJY_A  226 DIMSPRDKGFLCPEFPG--SFRKKCNFATTPICEYDGNMVSGYkkvmATIDSFQSFNTSTMHfTDERIEWKDPDGMLRDH 303  Hantaan virus 76-118
8JLX_A  344 TKNFHFHSKRVTAHGDTP 361  Orthonairovirus haemorrhagiae
P08668  952 INILVTKDIDFDNLGENP 969  Hantaan virus 76-118
Q8JSZ3 1392 TKNFHFHSKRVTAHGDTP 1409 Crimean-Congo hemorrhagic fever virus strain IbAr10200
5LJY_A  304 INILVTKDIDFDNLGENP 321  Hantaan virus 76-118
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