Conserved Protein Domain Family
HCV_capsid
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pfam01543: HCV_capsid (This model is not part of the current CDD release)
Hepatitis C virus capsid protein
Links
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Statistics
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PSSM-Id: 514340
Aligned: 5 rows
Threshold Bit Score: 120.193
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q70GD2    2 STNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPTPRHVGPRAGPGLSPGT 81   Hepatitis C virus g...
Q6XJ40    2 STLPKPKRQTKRNTLRRPKNVKFPAGGQIVGEVYVLPRRGPQLGVREVCRAYEWSQPRGRRQPTPKARPREGRSWAQPGY 81   Hepacivirus C
Q86686    2 ATNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPKLGVRATRKTSERSQPRGRRQPIPKARRPRAGPGLSPGT 81   Hepatitis C virus (...
Q81258    2 STLPKPQRKTKRNTIRRPQDVKFPGGGQIVGGVYVLPRRGPRLGVRATRKTSERSQPRGRRQPIPKARRSEGRSWaqpgy 81   Hepatitis C virus (...
P27959    2 STNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRGRRQPIPKARRPEGRAWAQPGY 81   Hepatitis C virus H...

Q70GD2   82 LGPsmamraAVGRDGsClpvalGLAGAPQTPGVGRAIWVRSSIPLR 127  Hepatitis C virus genotype 1
Q6XJ40   82 PWP------LYGNEG-C-----GWAGWLLPPRGSRPSWGQNDPRRR 115  Hepacivirus C
Q86686   82 LGPstatraWGGQDGsC----------------------------H 99   Hepatitis C virus (isolate Hunan)
Q81258   82 pwplygnegcgwagwllsprgsrpswgpndprrrsrnlgkvidtlt 127  Hepatitis C virus (isolate NZL1)
P27959   82 PWP------LYGNEG-L-----GWAGWLLSPRGSRPSWGPTDPRRR 115  Hepatitis C virus HC-J2
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