4KNL,2AR3,3HMB,1YCK,4BXD,4BJ4,3D2Y


Conserved Protein Domain Family
Amidase_2

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pfam01510: Amidase_2 
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N-acetylmuramoyl-L-alanine amidase
This family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.
Statistics
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PSSM-Id: 426298
Aligned: 526 rows
Threshold Bit Score: 34.1537
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4KNL_D          62 RPEGIVVHdtandrstingeisymk-----------nnyqnafvhafvdgdrIIETAP-------TDYLSW--------- 114 Staphylococcu...
jgi:Tter_0009  225 TPRKVILHdtvtinndpnpaatiraiyyy--havirgwgdigynylvdeqgnIYE------------GRAGgenv--vgg 288 Thermobaculum...
WP_014445355   300 EVRVLWVHhtatgndyncadswkivksiqsndvngkgfsdigynylvdkcgkLFE------------GRKGgvenpvvga 367 Actinoplanes ...
jgi:SACTE_3171  70 AVNAVFVHhtghpndydcadvprmlrameedhvrgegwddigynfvvdrcgtIYE------------GRAGgigrsvrga 137 Streptomyces ...
EDY61985       343 KVDAVFVHhtagtntydcaespaiirailtyhvktngwndvgynffvdkcgtVFE------------GRAGgvdkpvqga 410 Streptomyces ...
jgi:Cwoe_0099  183 RVDFSVVHhtesltsysraqapevvlgicrfhrngngwldigynllvdrfgtVYE------------GRVGgveqpviga 250 Conexibacter ...
EHO42856       181 P-TYIVIHhsgtstkasfedvvnkekqerk-nargayrldpsfhsvitydgvIHNYCR-------WDSIGW--------- 242 Caldithrix ab...
Q3ABL1          97 NVDYIVLHhtaatrdlswqeinsehk--------argfagfgyhfyinkagiIYA------------GRPLnvi----ga 152 Carboxydother...
8_pfamImport     4 QITHIAIHhtaapprigpariaelhiaadp-trgkeawpgigyhyfihengrIEQTNAletisyhVTR------------ 70 
WP_006718571     7 kITLIDLHhsagheknteeirqyhkn--------irgygdigysaviesdgtVGKgrdty----------------ysga 62  Desulfitobact...
4KNL_D         115 G--------VGaVGNPRFINVEIVHTH---------DYASFARSMNNYADYAA---TQ-LQYYGLKpdSA---------- 163 Staphylococcu...
jgi:Tter_0009  289 H--------AR-CYNWGTVGIAALGDHs--------LMPPSSKMVGALEDLIA---WI-FSKNHINplGHgslgsya--- 344 Thermobaculum...
WP_014445355   368 Q--------TK-GFNTNYAGIAVIGDFegdvktgkvPLQSNAAIEKTLAQVAA---AR-LGKYNYSptSTakvqagatng 434 Actinoplanes ...
jgi:SACTE_3171 138 H--------TT-GFNAHSVGVAAIGDFa-------pGVPVPQALIDGIAKVGA---WK-LRQ-GIDprGTvrmvstndds 196 Streptomyces ...
EDY61985       411 H--------TY-GFNGYSSGISVLGDFe-------nGGTPSAAAKQAVADVAA---WK-LGLHGVDpeAKvtltaagdtg 470 Streptomyces ...
jgi:Cwoe_0099  251 H--------AG-GWNSLSTGVAVIGSFt--------GSRPPQAAQDALTQVLA---WK-LQLAGVPaqGTigeispggae 309 Conexibacter ...
EHO42856       243 Hvakg-----prvsNANSLGLCFVGNFrnr---ssgKNKPSEQQIEAGARLLAlwrYL-Y---DIEekNV---------- 300 Caldithrix ab...
Q3ABL1         153 H---------AlGLNDESIGICFSGNFe--------EEKPTSEQINSGKLLVS---WLkYKIFNkp-------------- 198 Carboxydother...
8_pfamImport    71 H-------------SSYSVGVVFAGSFm-------nGKIPTSAQLRAGAHLVA---WL-MQELNIPlaR----------- 115
WP_006718571    63 HdpglapdgSRfTMNQRAYSICHIGNFqs-----pnADKMTDVQFNSSVKHCV---EK-CKELGIIpsKAt--------- 124 Desulfitobact...
4KNL_D         164 -------------EYdgngtvwTHyavsky-lggtdHAD------P 189 Staphylococcus aureus subsp. aureus NCTC 8325
jgi:Tter_0009  345 -------pydipnIA-------THyd--------lmGSCgnthrdP 368 Thermobaculum terrenum ATCC BAA-798
WP_014445355   435 k-faegawvtlnrIA-------GHmdg-------daTAC------P 459 Actinoplanes missouriensis
jgi:SACTE_3171 197 l-yergqavhlhvVS-------GHrdt-------feTNC------P 221 Streptomyces sp. SirexAA-E
EDY61985       471 v-wkkgdqatlntVS-------GHrdg-------faTLC------P 495 Streptomyces pristinaespiralis ATCC 25486
jgi:Cwoe_0099  310 nrwssgtrvafqrIA-------GHrda-------dhTDC------P 335 Conexibacter woesei DSM 14684
EHO42856       301 -------------VR--------Hsdvr-----rgkIIC------P 314 Caldithrix abyssi DSM 13497
Q3ABL1         199 ------------kVI-------GHkevaslrptatkTAC------P 219 Carboxydothermus hydrogenoformans Z-2901
8_pfamImport   116 -------------VW-------GHrefp-----dnmTVC------P 130
WP_006718571   125 -------------IK-------EHkdq-------faTAC------P 137 Desulfitobacterium metallireducens
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