4BOL,3LAT,1YB0


Conserved Protein Domain Family
Amidase_2

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pfam01510: Amidase_2 (This model is not part of the current CDD release)
N-acetylmuramoyl-L-alanine amidase
This family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.
Statistics
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PSSM-Id: 514319
Aligned: 435 rows
Threshold Bit Score: 42.7064
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4BOL_A          32 QDSRVQFIVLHYTSTdLphslg--------------ilthgG-V-S--AHYLIGDDepatVYRlvdenRRAW-------- 85  Pseudomonas a...
WP_012873968   222 QYTTPRKVILHDTVTiNndpnpaatira--iyyyhavirgwG-DiG--YNYLVDEQg--nIYE-----GRAGgenv--vg 287 Thermobaculum...
WP_014176185   277 YNTDVKSVFVHHTDGtNdyscadsasivrgiyiyhvktngwN-DiG--YNFLVDKCg--tIFE-----GRAGgvdmpvlg 346 Streptomyces
WP_014445355   297 VAKEVRVLWVHHTATgNdyncadswkivksiqsndvngkgfS-DiG--YNYLVDKCg--kLFE-----GRKGgvenpvvg 366 Actinoplanes ...
WP_014693766   213 YTGPVQVFFVHHTATgNdyscgsstsvvrgiqayqvkskgwN-DiG--YNFLVDKCg--tIFE-----GRRGgitrnvlg 282 unclassified ...
WP_245238207   302 YTKKVKAVFVHHTASgNkytcsqtpsvirsiyryhvtsmgwR-DiG--YNFLVDKCg--tLYE-----GRAGgvtkavlg 371 Streptomyces ...
Q9KZK5         242 YTKKVKTAFVHHSATgNnyrcsqapsvirgiyryhvhslgwR-DlG--YNFLVDKCg--hIYE-----GRAGgvskpvlg 311 Streptomyces ...
WP_014177085   292 YTKTVKAAFVHHTVTgNayscsqvpsvmrsiyryhvksmgwR-DfG--YNFAVDKCg--nIYE-----GRSGgvakavqg 361 Streptomyces
Q88KM1           9 PRAETDYLVVHCSATrPsqdigaad---------inrwhraKgWrCigYHFVIRRNg--vVEEgreld---------qig 68  Pseudomonas p...
jgi:Pedsa_0945   8 EMRTIKYLVVHCTATpHnttiasi----------mnywktvLgWkNpgYHYMIKADg--eIVNtfpie---------qis 66 
4BOL_A          86 -HAGvsewqgrtWLNATSIGIEIVNQGyrdtpqgrVWYPFSEAQIQALIPLLKDIAKRHGITpdR--------------- 149 Pseudomonas a...
WP_012873968   288 gHAR--------CYNWGTVGIAALGDH--------SLMPPSSKMVGALEDLIAWIFSKNHINplGhgslgsy-------- 343 Thermobaculum...
WP_014176185   347 aHTY--------GWNRESAGIAVLGNY--------TSTGASTDAMTSIARLAGWKLGQYGADpaGtvqltagatqknylg 410 Streptomyces
WP_014445355   367 aQTK--------GFNTNYAGIAVIGDFegdvktgkVPLQSNAAIEKTLAQVAAARLGKYNYSptStakvqagatngk--- 435 Actinoplanes ...
WP_014693766   283 aHTL--------GFNTDASAVAVIGDY--------RGTAAGSATEVAVAQLAAYKLGAAGNApdGrvvvtsgggpk---- 342 unclassified ...
WP_245238207   372 aHTL--------GFNNNSTGVAVIGTY--------STTKPSGAAVKAIAKLAAWKLGLYGVNprGktyltsaggnl---- 431 Streptomyces ...
Q9KZK5         312 aHTL--------GFNSNSMGIAVLGTY--------SSKKPSSAALKAIARLTAWKVGLYGMNprGktylksgggnl---- 371 Streptomyces ...
WP_014177085   362 aHTR--------GFNTNSMGIAVLGTY--------SSKKPAAKAVKAVAKLTAWKLGLFGRNpsGtthlksaggnr---- 421 Streptomyces
Q88KM1          69 aH-Ve-------GHNINSVGICMAGGVtead-invPENNFTPEQFASLKHLLGELKEKYps------------------- 120 Pseudomonas p...
jgi:Pedsa_0945  67 nG-Va-------GFNSVSIHIAYIGGIdak---gkAVDNRTPAQVASQIKLLKELKARFpn------------------- 116
4BOL_A         150 -------------IIGH----SdiapgrKVD------PGP 166 Pseudomonas aeruginosa PAO1
WP_012873968   344 ------apydipnIATH----Ydl---mGSCgnthrdPGY 370 Thermobaculum terrenum
WP_014176185   411 tsytadtkytfnrISAH----Rdg--ynTEC------PGN 438 Streptomyces
WP_014445355   436 --faegawvtlnrIAGH----Mdg--daTAC------PGK 461 Actinoplanes missouriensis
WP_014693766   343 --yrpgtrvrlyrISGH----Rda--glTEC------PGT 368 unclassified Actinoplanes
WP_245238207   432 --yakgkkvrlnvISGH----Rdg--faTEC------PGK 457 Streptomyces roseochromogenus
Q9KZK5         372 --yrkgkkvrlnvISGH----Rdg--faTNC------PGT 397 Streptomyces coelicolor
WP_014177085   422 --fkkgtkaklrvISGH----Rdg--ynTEC------PGN 447 Streptomyces
Q88KM1         121 -----------atIQGHrdfpKv----aKAC------PSF 139 Pseudomonas putida KT2440
jgi:Pedsa_0945 117 -----------aeIKGHrdfpNv----kKEC------PCF 135
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