1YA9


Conserved Protein Domain Family
Apolipoprotein

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pfam01442: Apolipoprotein (This model is not part of the current CDD release)
Apolipoprotein A1/A4/E domain
These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes Apolipoprotein A-I, Apolipoprotein A-IV and Apolipoprotein E.
Statistics
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PSSM-Id: 514271
Aligned: 84 rows
Threshold Bit Score: 42.2811
Created: 13-Feb-2025
Updated: 25-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1YA9_A           1 GEPEVTDQLEWQSNQPWEQALNR--FW--D-YLRWVQTLSDQVQEEL------QSSQVTQELTALMEDTMTEVKAYKKEL 69   house mouse
WP_013700763   307 RTNVLTGTWTEKIESLEQDLKES--SE--N-FDSRLEDAVAGLDNSL------AEKTGALEDKINESAGTFENEFADKIK 375  Treponema su...
7_pfamImport     1 QFSDFTAEYEVKRAALEKQYDDAlvKRisElTKKTLEQEKKFQTALLsgqttiQEQINTVNQKIHDFIEQYRNEIQKTIE 80  
Q0W387        1001 RVREAESELITKVSEVEASIAQQ--SR----EAKDLLKELEDTKETL------TSELENTRTSLMQELEETRSTVTREIQ 1068 uncultured m...
8_pfamImport     1 SVKDAEDRTVFIAIDTKDKLADI--AA--K-DIDKATHDLKAARDDV------VTKTKEVVDKVETSVADVGHDMKDIKD 69  
9_pfamImport     1 KVSDETKKIGEKIEETSADVAQI--AK--D-TKDAVIKEIKDDTKLV------KGKLATSADAAAETADSAKEKMTKETK 69  
10_pfamImport    1 KVTDRTKKIGEKIEETSADVAHA--AK--D-IKDAVIKEVKDDTKLV------KGKLAAGADAATEAVDSAKEKVTKETK 69  
WP_012028717  1282 AMTGKTDEIVTYVQQQSERLSQMldGKrgT-LVETLNSKTNQLTIEI------DRVTTDALKQIEMRGQAFAQTVNGNGS 1354 Bradyrhizobi...
Q89HV2        1274 AMTGKTDEIVTYVQQQADRLSNMidAKrgA-LVDAIGSKTSQLTLDI------DRVTSDALKSIETRGHAFSQTMMGNGS 1346 Bradyrhizobi...
WP_015916024   941 TLDSKIEQISDAASDADMRIELAlgNRmdT-IRAVYEESETRLSGTI------DAKLGALTETLGTADSRIEQAFGSKAD 1013 Rhizobium/Ag...
1YA9_A          70 EEQLGPVAEETRARLGKEVQAAQARLGADMEDLRNRLGQYRNEVHTMLGQSTEEIRARlsthlrkmrkrL---MRDAEDL 146  house mouse
WP_013700763   376 ELSDIVENSTSRIEDECSGRISEIEEKLEQSSSGIQNKFSEKLSQIESYFNETSNSIE-----------A---GYKERAD 441  Treponema su...
7_pfamImport    81 NADEYLKTETDSYNERMNGQLDKIENDLNSKFENFREILLSKQESQSATIDAAVQEFT-----------AwknSLKGKYE 149 
Q0W387        1069 GTRTEVKHDIEETRSEVTREMEEVRTQVSAEVEDIRTTVKRELDDARSRTISDLDDIR-----------N---KTITEIK 1134 uncultured m...
8_pfamImport    70 VAVIEAKEDANVIKEKLAAKAESISDSVEITKDKTTKEAKKAKEKASGFFSGIFKGSK-----------H---SMDSAVD 135 
9_pfamImport    70 KAKEKTTSFFSGIFKGAKHAAEDVTDDVKEFLDETKKEAEMEEEHVKEKATASLKDLK---------------------- 127 
10_pfamImport   70 KAKEKTTGFFSGIFKGAKHAVEDATDDVKEFLDETKKEAEIEEEHAKEKAA-------------------------ASLK 124 
WP_012028717  1355 EVARTITSAGELATTAITKSLKDLEQASRAAIEQSRQVSVAAVTEMQETSKILRTDTV-----------A----LFERLR 1419 Bradyrhizobi...
Q89HV2        1347 EVARTINAASEMATGAVGKSLKDLEQASRAAIDQSRQVSIAAVTEMQETSKILRTDTV-----------A----LFERLR 1411 Bradyrhizobi...
WP_015916024  1014 QLRAVYEEGQARLTQTLDSKVDQLSDVAAEADMRIEFALGSKVDSIRSVYEDSEARLA-----------G---TIDAKLG 1079 Rhizobium/Ag...
1YA9_A         147 QKRLAVYKAGAREGAERGVSAIRERLGPLV 176  house mouse
WP_013700763   442 SLQNELENKFSSLLETFTKQAKIFEDKTSV 471  Treponema succinifaciens
7_pfamImport   150 DASQQIEDQLKLLADTNDQKINDLQKDFSV 179 
Q0W387        1135 DVSSSAVERVESVSAMTIERIEDVSVKTTT 1164 uncultured methanogenic archaeon
8_pfamImport   136 DVKEFLDETKKEAA----LEQTHVKEAAEA 161 
9_pfamImport   128 --------------DKKDTAVSEVQETVDK 143 
10_pfamImport  125 DLKDKKDTAVSEVQETMDKAADRVKETKDK 154 
WP_012028717  1420 EGNILLQEVLTGAHDNLNSLERALVARVAD 1449 Bradyrhizobium sp. ORS 278
Q89HV2        1412 EGNILLQEVLTGAHDNLNSLERALVTRVAD 1441 Bradyrhizobium japonicum
WP_015916024  1080 QLIETVGFADSRVQQALGSKADQIREAYEA 1109 Rhizobium/Agrobacterium group
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