4GZA,1OLZ,6QP9,6QP8,6WTS,6WTS,6QP7,6FKK,3NVQ,7Y4Q,3AL8,5L5K,4FWW,6GCU


Conserved Protein Domain Family
Sema

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pfam01403: Sema (This model is not part of the current CDD release)
Sema domain
The Sema domain occurs in semaphorins, which are a large family of secreted and transmembrane proteins, some of which function as repellent signals during axon guidance. Sema domains also occur in the hepatocyte growth factor receptor.
Statistics
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PSSM-Id: 514239
Aligned: 183 rows
Threshold Bit Score: 86.5312
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4GZA_G         291 LQDVFLMn--SKDP--K-------NPIVYGVFTTS----S---NIfKGSAVCMYSMSDVRRVF-LGP----YAH---R-- 342  house mouse
B0S5N4         309 VQAAYKHrpgKILAqaLgls--edEDVLFVIFSQGqknrA---NPpRETVLCLFTLHQINLAMrERI----KSCyrgE-- 377  zebrafish
XP_069048642   306 LQAAYLSkagAILArsLgis--pdDDVLYTIFSKGqkrrT---KSpEESALCVFMLKNINDRIkDRL----QSCykgE-- 374 
P70207         310 LQAAYLAkpgEALAqaFnis--sdEDVLFAIFSKGqkqyH---HPpDDSALCAFPIRAINLQIkERL----QSCyhgE-- 378  house mouse
25_pfamImport    1 LQAAYLSkvgRVLAksLnis--aqEDVLFAVFSKGqkqyH---DPsDHSALCIFTIQDINARIkERL----QSCyqgE-- 69  
XP_023810748   322 LQAAYLSkvgRVLAksLnis--aqEDVLFAVFSKGqkqyH---DPsDHSALCIFTIQDINARIkERL----QSCyqgE-- 390 
Q7QEM6         241 VSAAYVGkpgHELAqsLeit--tnDDVLFAVFDAP----T---AN--KSALCVYSLKAIRKKFmHNI----KKC---Y-- 300  Anopheles ga...
3AL8_B         280 LQAAYLAkpgEALA--QafnissdEDVLFAIFSKGqkqyH---HPpDDSALCAFPIRAINLQIkERL----QSC---Yhg 347  house mouse
5L5K_A         277 LQAAYLSkagAVLG--RtlgvrpdDDLLFTVFSKGq---KrkmKSlDESALCIFILKQINDRI-KDRlqscYRG---E-- 345  house mouse
XP_014350337   296 IQSAYLGkpgKQLAgsLgvs--edEDVLFAVFSQGqknrA---NPpKESVLCLFILQEINTRIrERI----QSCyrgE-- 364  coelacanth
4GZA_G         343 -DGPNYQWVPyQGRvpyPRPGTCPSKTFggfdSTKDLPDDVITFARSHPAMYNPVFpinNRPIMIKTDVNYqfTQIVVDR 421  house mouse
B0S5N4         378 -GKLSLPWLL-------NKELPCINTPK-------QIGDDFCGLVLNQPLGGLMVIe--GIPLFDDRTDGM--ASVAAY- 437  zebrafish
XP_069048642   375 -GTLDLAWLK-------VKDIPCSSALL-------TIDDNFCGLDMNAPLGVSELVr--GIPLFSEESDRM--TSVIAY- 434 
P70207         379 -GNLELNWLL-------GKDVQCTKAPV-------PIDDNFCGLDINQPLGGSTpv--eGLTLYTTSRDRL--TSVASY- 438  house mouse
25_pfamImport   70 -GNLELHWLL-------GKDVQCTKAPV-------PIDDHFCGLDINQPLGGSQLVs--GRTVFTESRDRL--TSVTSY- 129 
XP_023810748   391 -GNLELHWLL-------GKDVQCTKAPV-------PIDDHFCGLDINQPLGGSQLVs--GRTVFTESRDRL--TSVTSY- 450 
Q7QEM6         301 -NGEGLRGLDyISQ-----NMPCIATKL------QTIGEDFCGLDVNSPLGGEQAVas--lAVILSEE-RM--TSVAVT- 362  Anopheles ga...
3AL8_B         348 eGNLELNWLL-------GKDVQCTKAPV----P---IDDNFCGLDINQPLGGS--TpveGLTLYTTSRDRL--TSVASYV 409  house mouse
5L5K_A         346 -GTLDLAWLKv-------KDIPC---SS----ALLTIDDNFCGLDMNAPLGVSEMv--rGIPVFTEDRDRM--TSVIAY- 405  house mouse
XP_014350337   365 -MTLALPWLL-------NKELACINTPM-------KIDDDFCGLVLNQPLGGLRVIe--GVPLFEDRADGM--ASVAAY- 424  coelacanth
4GZA_G         422 VDAEDGQYDVMFIGTDVGTVLKV-VSVPKEtwh-dleEVLLEEMTVFREPTTISAMELS 478  house mouse
B0S5N4         438 ---TYGDHSVVFVGTRSGHLKKI-RVNGVPpps--enALLYETVTVVEGS-PILRDMVF 489  zebrafish
XP_069048642   435 ---VYKNHSLAFIGTRSGKLKKIrVDGPSHg------ALQYETVQVVENG-PILRDMAF 483 
P70207         439 --VYNG-YSVVFVGTKSGKLKKIrADGPPHg------GVQYEMVSVFKDGSPILRDMAF 488  house mouse
25_pfamImport  130 --IYNG-HSVVFLGSRSGRIKKV-VQVPVEs-----cEQYGTCAECLSSGDPHCGWCVL 179 
XP_023810748   451 --IYNG-HSVVFLGSRSGRIKKIrLDNALEg------GVLYETVIVMKDTGSILRDMAF 500 
Q7QEM6         363 ---ATSNFTVVFIGTETGQLKKI-VMESST-------SAMQYAMMNVDLGSPIQPDMYL 410  Anopheles gambiae str. PEST
3AL8_B         410 YNG----YSVVFVGTKSGKLKKIrADGPPHg------GVQYEMVSVFKDGSPILRDMAF 458  house mouse
5L5K_A         406 ---VYKNHSLAFVGTKSGKLKKIrVDGPKGn------ALQYETVQVVDSG-PVLRDMAF 454  house mouse
XP_014350337   425 ---IYNEHSVVFIGTRAGTLKKI--RVDSVpqvsqnaLL-YETVSVME-GSPIQRDMVF 476  coelacanth
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