Conserved Protein Domain Family
5_3_exonuc

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pfam01367: 5_3_exonuc 
5'-3' exonuclease, C-terminal SAM fold
Statistics
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PSSM-Id: 426224
Aligned: 752 rows
Threshold Bit Score: 78.565
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_002583302   217 WPEQITDLKGIQGDTSDNIPGVRGVAS-AAPLLLGEYGTVENIYEVIheaeqDkkELKElqdfwkNSlgisrsPYKSLTK 295  Enterocloste...
BAI69256       167 KPHLIPHLLALVGDQTDNIEGVKGIGKkTAIKVLEKYGSIENILRN-----------F-------DD------FKASFPH 222  Hydrogenobac...
WP_012991993   168 PPEKLADYLALVGDKVDNVEGVKGVGPkTALKVLEAYGSVENILSQ-----------W-------DS------FIKAFPH 223  Thermocrinis...
WP_012675313   168 YPEQFVDYLSMIGDTVDNIIGVRGVGPkTAEKLLNQYGNLKNILEHK-----DqlK---------PK------LKEAFEE 227  Persephonell...
Q6MEQ2         169 MPAQMIDYLAIIGDASDNIPGLTGFGPkTAADLLEKFGSLDYILEHP-----L--EVSG------KK------KQDTLIS 229  Candidatus P...
jgi:Arnit_1658 176 HPNQFTDYQSLLGDSADNVPGVKGVGAkTAEALIKEFGTLENIYENI-----E--SVSK------PR------WKTLLLE 236  Arcobacter n...
WP_024266663   173 HPDQIIDYLALLGDSADNVPGVKGIGQkTAEKLLGQYESLDGIYDHL-----E--DIQS------AN------WKKKLSE 233  Salinispira ...
Q9X1V4         175 EPQQIPDLLALTGDEIDNIPGVTGIGEkTAVQLLEKYKDLEDILNHVrelpqK--------------------VRKALLR 234  Thermotoga m...
WP_012002207   174 EPSKIVDLLALMGDSVDNVPGVKGIGMkTAAELIEKFGNLDEIYGKI-----DenS----------R------IGKLLSR 232  Pseudothermo...
WP_013931596   174 EPSQIVDLLALIGDSVDNVPGVKGIGEkTAVELVTKYGSIENIKQKI-----DpnS----------K------VGKLILS 232  Pseudothermo...
WP_002583302   296 t-gEegelcgeaaarlskeLATIKTDIPLDlele-dfsvSF 334  Enterocloster clostridioformis
BAI69256       223 adrDklel--------syyLVKLQPPPELTieed-qlcmKE 254  Hydrogenobacter thermophilus TK-6
WP_012991993   224 askEnler--------sywLVKLHPPEEMSvdiq-tlriKD 255  Thermocrinis albus
WP_012675313   228 a-eErlke--------nifLVSLEKNIDIDiqpe-dlkkEK 258  Persephonella marina
Q6MEQ2         230 e-kEkvll--------skkLVIVDTTVSFPnqed-ffklTS 260  Candidatus Protochlamydia amoebophila UWE25
jgi:Arnit_1658 237 n-kEmafi--------skeLVTLKKDC-HCidfldqfelPK 267  Arcobacter nitrofigilis DSM 7299
WP_024266663   234 g-rEsafl--------skkLVILKDDLDFEftld-dltlES 264  Salinispira pacifica
Q9X1V4         235 d-rEnail--------skkLAILETNVPIEinwe-elryQG 265  Thermotoga maritima
WP_012002207   233 g-kDdafk--------skqLVTLMTDLDLRltwd-dlkyAG 263  Pseudothermotoga lettingae
WP_013931596   233 n-wEdaek--------skkLVTLMTDLDLKvnwe-eliyQG 263  Pseudothermotoga thermarum
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