Conserved Protein Domain Family
5_3_exonuc

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pfam01367: 5_3_exonuc (This model is not part of the current CDD release)
5'-3' exonuclease, C-terminal SAM fold
Statistics
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PSSM-Id: 514210
Aligned: 644 rows
Threshold Bit Score: 80.133
Created: 13-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_022201946  216 VWPEQITDLKGIQGDTSDNIPGVRGVAS-AAPLLL-GEYGTVENIYEVIheaeqDkkELKelqdfwkNSlgisrsPYKSL 293  Enterocloster...
C4L9Z0        168 LQPSQLVDFWALTGISGMNIKGVPGIGEkTAQQLL-SEYGTLTQLLD-Ada-tdN--------------------KKLQL 224  Tolumonas aue...
WP_021759245  186 LSPEQWPDVQALVGDTSDNIPGVSGIGPkTALAIF-KEHPTLEAVQAHL-----DalK---------PS------VRAKL 244  Megalodesulfo...
WP_014258589  177 MEPGHWPDYQALIGDSSDNIPGVPGIGPkTATKIM-AEHRTLEEIEAHL-----D--ELP-------KT------LQAKL 235  Desulfocurvib...
WP_015852829  177 LEPEQWADFQALVGDSADNIPGVPGVGKvTATKIM-AEYPTLEDIRDNY-----D--KLK-------PA------IQKKM 235  Maridesulfovi...
WP_015414343  177 MEPSTWPDFQALIGDSADNIPGIPKVGPvTARKIFaETGPTLEDLRDNY-----T--RLP-------DK------LRDKV 236  Pseudodesulfo...
WP_015775289  177 LQPDQWADFQAMTGDAADNIPGIPKVGPkTAMGFL-RRFPSLDLLKKNF-----D--RLT-------AK------EQTLL 235  Desulfomicrob...
Q30VQ3        243 LSPSQWPDFQAVIGDSSDNIPGVPGVGPkTAAQIF-AEFPTLEAIQENE-----K--ALK-------PG------VQKKF 301  Desulfovibrio...
Q1MS67        175 LLPSQWPDVQAIIGDSSDNIPGIPGIGLkTAKKIF-QDFPSLESIKDNF-----S--SLP-------LP------VQKKF 233  Lawsonia intr...
Q72ES3        177 LTPAQWPDVQAVIGDTSDNIPGIPGVGPkTASKIF-ADFPTLEDIRDGF-----D--RLP-------PN------LQKKF 235  Desulfovibrio...
WP_022201946  294 TK-TGEEgelcgeaaARL--SKELATIKTD--IPLDLELEDFSVSFCKED 338  Enterocloster clostridioformis
C4L9Z0        225 VQqHREV--------CLL--AQELVRLKDD--IPLGFNLKDLRYTP--PA 260  Tolumonas auensis DSM 9187
WP_021759245  245 AP-VMDK--------TFL--YRTLTTLDRAgcAPGT--WKDFPRTAPDRD 281  Megalodesulfovibrio gigas
WP_014258589  236 RE-HIQD----------AytYRQLTRLRTD--FCATLGLDSLAWREPDWK 272  Desulfocurvibacter africanus
WP_015852829  236 KD-ELEN----------IfvYRELTRMRLG--SCSDCDLKQCELRSVDGD 272  Maridesulfovibrio salexigens
WP_015414343  237 EP-ELEN----------VflYRQLTRMKTD--CC-DIPLEDFRIRQPDTD 272  Pseudodesulfovibrio piezophilus
WP_015775289  236 SP-HMEQ----------VfvYRKLTTLRTD--MCTEFGLDDLAVGEVDGG 272  Desulfomicrobium baculatum
Q30VQ3        302 AG-QWDN----------IylYRRLTTLDTG--RCTSLALKDMTVQSVDAD 338  Desulfovibrio alaskensis G20
Q1MS67        234 DG-HLDA----------MflYRQLTTLSTT--ECIDLQIDTIKVGPINVQ 270  Lawsonia intracellularis PHE/MN1-00
Q72ES3        236 EQ-HLDA----------MflYRQLTTLAID--RCADLTPERLSVQPLDAR 272  Desulfovibrio vulgaris str. Hildenborough
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